GeneModel BLAST Result against tribolium

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002640-TA|BGIBMGA002640-PA|IPR001578|Peptidase C12,
ubiquitin carboxyl-terminal hydrolase 1
         (230 letters)

Database: tribolium 
           317 sequences; 114,650 total letters

Searching....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ457831-1|CAD29886.1|  249|Tribolium castaneum helix-loop-helix...    23   2.0  
AY043293-2|AAK96034.1|  353|Tribolium castaneum homeodomain tran...    22   3.5  
AF230313-1|AAF64147.1|  210|Tribolium castaneum labial protein p...    22   3.5  
AF230312-1|AAF64146.1|  253|Tribolium castaneum labial protein p...    22   3.5  
AY008296-1|AAG22858.1|  556|Tribolium castaneum Dorsal protein.        21   6.1  
AM292354-1|CAL23166.1|  321|Tribolium castaneum gustatory recept...    21   6.1  

>AJ457831-1|CAD29886.1|  249|Tribolium castaneum helix-loop-helix
           transcription factor protein.
          Length = 249

 Score = 23.0 bits (47), Expect = 2.0
 Identities = 16/82 (19%), Positives = 34/82 (41%), Gaps = 3/82 (3%)

Query: 58  ISDAYENHKKTEENEILSKGQEVSGNIFYMKQNISNACGTIALVHSVANNTDIIELSDGH 117
           +SD   ++K   E     +   ++ ++  +K  I +A       HS     DI+E++  H
Sbjct: 31  VSDNRRSNKPIMEKR---RRARINNSLNELKTLILDAMKKDPARHSKLEKADILEMTVKH 87

Query: 118 MQKFLNEAKGLDATARGKLLEK 139
           +Q    +   + A     ++ K
Sbjct: 88  LQNLQRQQAAMSAATDPSVVSK 109


>AY043293-2|AAK96034.1|  353|Tribolium castaneum homeodomain
           transcription factor Labialprotein.
          Length = 353

 Score = 22.2 bits (45), Expect = 3.5
 Identities = 8/15 (53%), Positives = 11/15 (73%)

Query: 112 ELSDGHMQKFLNEAK 126
           E++DGH   FL+E K
Sbjct: 121 EVADGHQHHFLHENK 135


>AF230313-1|AAF64147.1|  210|Tribolium castaneum labial protein
           protein.
          Length = 210

 Score = 22.2 bits (45), Expect = 3.5
 Identities = 8/15 (53%), Positives = 11/15 (73%)

Query: 112 ELSDGHMQKFLNEAK 126
           E++DGH   FL+E K
Sbjct: 121 EVADGHQHHFLHENK 135


>AF230312-1|AAF64146.1|  253|Tribolium castaneum labial protein
           protein.
          Length = 253

 Score = 22.2 bits (45), Expect = 3.5
 Identities = 8/15 (53%), Positives = 11/15 (73%)

Query: 112 ELSDGHMQKFLNEAK 126
           E++DGH   FL+E K
Sbjct: 121 EVADGHQHHFLHENK 135


>AY008296-1|AAG22858.1|  556|Tribolium castaneum Dorsal protein.
          Length = 556

 Score = 21.4 bits (43), Expect = 6.1
 Identities = 9/23 (39%), Positives = 15/23 (65%)

Query: 6   LVPLESNPDVLNKFLQKLGVPNK 28
           L+PL+S P +L +  QK   P++
Sbjct: 341 LLPLDSEPGMLKRKRQKYHDPSQ 363


>AM292354-1|CAL23166.1|  321|Tribolium castaneum gustatory receptor
           candidate 33 protein.
          Length = 321

 Score = 21.4 bits (43), Expect = 6.1
 Identities = 8/31 (25%), Positives = 18/31 (58%)

Query: 74  LSKGQEVSGNIFYMKQNISNACGTIALVHSV 104
           L KG+++  N++Y+   + N    + L ++V
Sbjct: 89  LLKGRKIRKNLYYLLLFVINVLYVLTLCYAV 119


  Database: tribolium
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 114,650
  Number of sequences in database:  317
  
Lambda     K      H
   0.314    0.132    0.377 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 52,824
Number of Sequences: 317
Number of extensions: 2176
Number of successful extensions: 6
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of query: 230
length of database: 114,650
effective HSP length: 55
effective length of query: 175
effective length of database: 97,215
effective search space: 17012625
effective search space used: 17012625
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (22.0 bits)
S2: 42 (21.0 bits)