GeneModel BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002640-TA|BGIBMGA002640-PA|IPR001578|Peptidase C12,
ubiquitin carboxyl-terminal hydrolase 1
         (230 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC27F1.03c |uch1||ubiquitin C-terminal hydrolase Uch1|Schizosa...    98   8e-22
SPBC409.06 |uch2||ubiquitin C-terminal hydrolase Uch2|Schizosacc...    92   5e-20
SPCC74.01 |sly1||SNARE binding protein Sly1|Schizosaccharomyces ...    29   0.76 
SPAC22G7.06c |ura1||carbamoyl-phosphate synthase |Schizosaccharo...    27   1.8  
SPBC25H2.13c |cdc20|pol2|DNA polymerase epsilon catalytic subuni...    27   3.1  
SPAPJ760.02c |app1||App1 protein|Schizosaccharomyces pombe|chr 1...    27   3.1  
SPCC306.06c |||ER membrane protein, BIG1 family |Schizosaccharom...    26   5.3  
SPBC106.08c |mug2||DUF1773 family protein 1|Schizosaccharomyces ...    25   7.1  
SPAPB1A10.12c |alo1||D-arabinono-1,4-lactone oxidase|Schizosacch...    25   7.1  
SPAC57A10.10c |sla1||La protein homolog|Schizosaccharomyces pomb...    25   9.3  

>SPAC27F1.03c |uch1||ubiquitin C-terminal hydrolase
           Uch1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 222

 Score = 98.3 bits (234), Expect = 8e-22
 Identities = 67/211 (31%), Positives = 108/211 (51%), Gaps = 14/211 (6%)

Query: 8   PLESNPDVLNKFLQKLGVPNKWNIVDVMGLDPETLSWVPRPVLSVMLLFPISDAYENHKK 67
           PLE+ P+VL  +LQK+GV +  ++ D+  L+ E   ++PRPV +++ +FP S     +K 
Sbjct: 4   PLENTPEVLEPYLQKIGVQDA-SVFDLFSLE-EIPEYIPRPVHALLFVFPSSGTKTIYKG 61

Query: 68  TEENEILSKGQEVSGNIFYMKQNISNACGTIALVHSVANNTDIIELSDG-HMQKFLNEAK 126
           +    IL K    S  + +  Q I NACGTI L+H+V+N     ++++   ++  +  A+
Sbjct: 62  SR---ILPKD---SDKVLWYPQTIPNACGTIGLLHAVSNGELRRKVNENDFIKSLIRTAE 115

Query: 127 GLDATARGKLLEKSEGIINAHKELAQEGQTNTPSAED-PVNHHFISFV----QKDGALYE 181
           G     R KL+E S+ +   H   A        S ED   + HFI FV    + D   YE
Sbjct: 116 GSSIEERAKLIEDSKELEALHAAFAGPPLEVEGSEEDVETDLHFICFVKGKSKDDNHFYE 175

Query: 182 LDGRKAFPVNHGPTSQETLLEDAAKICKEFM 212
           LDGR+  PV H     + L  +   + K ++
Sbjct: 176 LDGRQEGPVQHSEIESDLLNAEVLSVIKNYI 206


>SPBC409.06 |uch2||ubiquitin C-terminal hydrolase
           Uch2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 300

 Score = 92.3 bits (219), Expect = 5e-20
 Identities = 64/224 (28%), Positives = 113/224 (50%), Gaps = 17/224 (7%)

Query: 9   LESNPDVLNKFLQKLGVPNKWNIVDVMGLDPETLSWVPRPVLSVMLLFPISDAYENHKKT 68
           +ES+  V    ++ LGV +   + ++  LD ++L   P  +  ++ LF  +   +    T
Sbjct: 6   IESDAGVFTDLIENLGVKDV-EVDELYSLDVDSLRQFP-DIYGIIFLFKWNSKVDKPDGT 63

Query: 69  EENEILSKGQEVSGNIFYMKQNISNACGTIALVHSVANNTDIIELSDGHMQKFLNEAKGL 128
            + + +        NIF+ KQ I+NAC T AL+  + N++D I+L    + +F + +K L
Sbjct: 64  MDYDSMD-------NIFFAKQVINNACATQALLSVLLNHSDEIDLGTT-LSEFKDFSKTL 115

Query: 129 DATARGKLLEKSEGIINAHKELAQEG-----QTNTPSAEDPVNHHFISFVQKDGALYELD 183
               +G+ L  SE I   H   A+       +    + ED V +HFI++   +   YELD
Sbjct: 116 PPELKGEALGNSEHIRCCHNSFARSDPFISEEVRAATDEDEV-YHFIAYTNINNVFYELD 174

Query: 184 GRKAFPVNHGPTSQETLLEDAAKICKEFMAR-DPNEVRFTVIAL 226
           G +A P+NHG  ++E   E A  + +  +A  DP E+RF ++ +
Sbjct: 175 GLQAAPINHGSCTKEEFAEKAVSVIQARIANYDPAEIRFNLMVI 218


>SPCC74.01 |sly1||SNARE binding protein Sly1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 639

 Score = 28.7 bits (61), Expect = 0.76
 Identities = 17/62 (27%), Positives = 28/62 (45%), Gaps = 2/62 (3%)

Query: 140 SEGIINAHKELAQEGQTNTPSAEDPVNHHFISFVQKDGALYELDGRKAFPVNHGPTSQET 199
           S  ++    ELA +  TNT      V   ++++V  +   + L   K F   H P+S E 
Sbjct: 126 SRALLEQFAELASK--TNTSHMIHQVYDQYLNYVVLESDFFSLQLPKIFHTFHNPSSDEA 183

Query: 200 LL 201
           L+
Sbjct: 184 LI 185


>SPAC22G7.06c |ura1||carbamoyl-phosphate synthase |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 2244

 Score = 27.5 bits (58), Expect = 1.8
 Identities = 19/80 (23%), Positives = 38/80 (47%), Gaps = 1/80 (1%)

Query: 143  IINAHKELAQEGQTNTPSAEDPVNHHFISFVQKDGALYELDGRKAFPVNH-GPTSQETLL 201
            +I+ + E A+E + +  + E  +  H IS   ++  ++  D     P     PT+ E ++
Sbjct: 1205 VISKYIENAKEIELDAVAREGKMVMHVISEHVENAGVHSGDATLVLPPQDLAPTTIERIV 1264

Query: 202  EDAAKICKEFMARDPNEVRF 221
            + AAKI +      P  ++F
Sbjct: 1265 DAAAKIGEALNITGPYNIQF 1284


>SPBC25H2.13c |cdc20|pol2|DNA polymerase epsilon catalytic subunit a
            Pol2 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2199

 Score = 26.6 bits (56), Expect = 3.1
 Identities = 11/25 (44%), Positives = 15/25 (60%)

Query: 161  AEDPVNHHFISFVQKDGALYELDGR 185
            AE+ V  HF+    KD  LY++D R
Sbjct: 1099 AEESVKRHFLRLWLKDNGLYDVDIR 1123


>SPAPJ760.02c |app1||App1 protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 857

 Score = 26.6 bits (56), Expect = 3.1
 Identities = 10/31 (32%), Positives = 22/31 (70%)

Query: 144 INAHKELAQEGQTNTPSAEDPVNHHFISFVQ 174
           ++A + L ++ +++T + E+PV+HH  S V+
Sbjct: 337 LSARRALFEKKESSTKNVENPVSHHLKSPVR 367


>SPCC306.06c |||ER membrane protein, BIG1 family
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 311

 Score = 25.8 bits (54), Expect = 5.3
 Identities = 13/47 (27%), Positives = 20/47 (42%)

Query: 121 FLNEAKGLDATARGKLLEKSEGIINAHKELAQEGQTNTPSAEDPVNH 167
           ++NE          +L+E  E   N    L Q+ Q N   A  P+N+
Sbjct: 144 YMNELSNESYHRSAQLMELDEMFYNLQSTLEQDAQWNVIIASSPLNN 190


>SPBC106.08c |mug2||DUF1773 family protein 1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 296

 Score = 25.4 bits (53), Expect = 7.1
 Identities = 21/77 (27%), Positives = 38/77 (49%), Gaps = 8/77 (10%)

Query: 106 NNTDIIELSDGHMQ-KFLNEAKGLDATARGKLLEKSEGIINAHKELAQEGQTNTPSAEDP 164
           +NT+++   +  ++ K ++  K +D +  G  L + E    +H +    GQ      +DP
Sbjct: 31  SNTNMLSTEENIVKAKAVSRKKPVDVSYAG--LARHE----SHVDTDYHGQALNTDNQDP 84

Query: 165 VNHHFISFVQKDGALYE 181
            N+   SFV K+  LYE
Sbjct: 85  KNYQARSFV-KENELYE 100


>SPAPB1A10.12c |alo1||D-arabinono-1,4-lactone
           oxidase|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 461

 Score = 25.4 bits (53), Expect = 7.1
 Identities = 17/47 (36%), Positives = 21/47 (44%), Gaps = 8/47 (17%)

Query: 7   VPLESNPDVLNKFLQ-------KLGVPNKWNI-VDVMGLDPETLSWV 45
           +PLES PD L K +        K+G    W I V V    PE   W+
Sbjct: 326 IPLESAPDALEKLINYTVDDAGKIGAYTHWPIEVRVCAPTPEDECWL 372


>SPAC57A10.10c |sla1||La protein homolog|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 298

 Score = 25.0 bits (52), Expect = 9.3
 Identities = 11/18 (61%), Positives = 13/18 (72%), Gaps = 1/18 (5%)

Query: 13  PDVLNKFLQKL-GVPNKW 29
           PDV NKFL+K+   P KW
Sbjct: 207 PDVANKFLEKVKTAPLKW 224


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.314    0.132    0.377 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,087,994
Number of Sequences: 5004
Number of extensions: 46113
Number of successful extensions: 83
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 73
Number of HSP's gapped (non-prelim): 10
length of query: 230
length of database: 2,362,478
effective HSP length: 70
effective length of query: 160
effective length of database: 2,012,198
effective search space: 321951680
effective search space used: 321951680
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (22.0 bits)
S2: 52 (25.0 bits)