Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA002640-TA|BGIBMGA002640-PA|IPR001578|Peptidase C12,
ubiquitin carboxyl-terminal hydrolase 1
(230 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_04_0697 + 27331643-27331693,27331798-27331917,27332007-273320... 167 5e-42
02_05_0168 + 26423464-26423790,26423828-26423941,26424366-264244... 122 2e-28
04_04_1513 - 34107700-34107765,34108475-34108551,34108640-341086... 88 6e-18
02_01_0599 - 4455151-4455915,4455999-4456098,4456176-4456222,445... 75 6e-14
02_05_1262 + 35312313-35312343,35312840-35312886,35313614-353136... 69 4e-12
01_06_0733 - 31563246-31563462,31563721-31563947,31563983-315640... 30 1.8
12_02_0999 - 25134828-25135113,25135479-25135535,25136171-251362... 29 2.4
12_02_0953 - 24736642-24736673,24737104-24737188,24737267-247373... 29 4.2
07_01_0302 - 2169271-2169531,2169778-2169828,2169929-2170381 28 5.5
>04_04_0697 +
27331643-27331693,27331798-27331917,27332007-27332057,
27332682-27332787,27333218-27333276,27333372-27333446,
27333909-27333957,27334064-27334140,27334400-27334483
Length = 223
Score = 167 bits (407), Expect = 5e-42
Identities = 84/221 (38%), Positives = 136/221 (61%), Gaps = 7/221 (3%)
Query: 7 VPLESNPDVLNKFLQKLGVPNKWNIVDVMGLDPETLSWVPRPVLSVMLLFPISDAYENHK 66
+PLE+NP+V+N+F++ LGVP + DV GLD E L+ VP+PVL+V+LL+P D +
Sbjct: 6 LPLEANPEVMNQFMRGLGVPAEAGFCDVYGLDDEMLAMVPQPVLAVILLYP-QDRKKESV 64
Query: 67 KTEENEILSKGQEVSGNIFYMKQNISNACGTIALVHSVANNTDIIELSDG-HMQKFLNEA 125
+ + + SK ++S N+++ KQ I NACGT+ ++H++ N I+L +G + +F +
Sbjct: 65 ASPSSTVESK--KLSKNVYFTKQTIGNACGTVGIIHAIGNALSRIKLVEGSYFDRFYKQT 122
Query: 126 KGLDATARGKLLEKSEGIINAHKELAQEGQTNTPSAEDPVNHHFISFVQKDGALYELDGR 185
+D R LE+ E + AH G T A+D V H++ F D ++ELDG
Sbjct: 123 ADMDPAQRASFLEEDEEMEKAHSVAVSAGDT---EAKDGVIEHYVCFSCVDDEIFELDGG 179
Query: 186 KAFPVNHGPTSQETLLEDAAKICKEFMARDPNEVRFTVIAL 226
+ P++HGP+S ++LL+DAAK+ K +A+ P + F V+AL
Sbjct: 180 NSQPISHGPSSPDSLLQDAAKVIKARIAQYPGSLNFNVMAL 220
>02_05_0168 +
26423464-26423790,26423828-26423941,26424366-26424448,
26424756-26424804,26425789-26425894,26426460-26426518,
26426604-26426678,26427112-26427160,26427253-26427329,
26427662-26427744,26427852-26427867
Length = 345
Score = 122 bits (294), Expect = 2e-28
Identities = 57/149 (38%), Positives = 92/149 (61%), Gaps = 4/149 (2%)
Query: 79 EVSGNIFYMKQNISNACGTIALVHSVANNTDIIELSDG-HMQKFLNEAKGLDATARGKLL 137
++S +++ KQ + NACGT+ ++H++ N ++L +G + +F + +D R L
Sbjct: 192 DLSKRVYFTKQTVGNACGTVGVIHAIGNAASKLKLVEGSYFDRFYKQTVDMDPVQRAAFL 251
Query: 138 EKSEGIINAHKELAQEGQTNTPSAEDPVNHHFISFVQKDGALYELDGRKAFPVNHGPTSQ 197
E+ + + +AH A G T+ A VN HF+ F DG LYELDGRK+ P+ HGP+S
Sbjct: 252 EEDDEMEDAHSVAASAGDTD---ANVEVNEHFVCFSCVDGELYELDGRKSQPICHGPSSP 308
Query: 198 ETLLEDAAKICKEFMARDPNEVRFTVIAL 226
+TLL+DAAK+ K +A +P+ + F V+AL
Sbjct: 309 DTLLQDAAKVIKARIASNPDSMNFNVMAL 337
Score = 39.1 bits (87), Expect = 0.003
Identities = 19/43 (44%), Positives = 29/43 (67%), Gaps = 1/43 (2%)
Query: 18 KFLQKLGVPN-KWNIVDVMGLDPETLSWVPRPVLSVMLLFPIS 59
+F+ LGV + DV GLD E L+ VP+PVL+V+ L+P++
Sbjct: 65 QFMWGLGVAEGEAQFCDVYGLDDELLAMVPQPVLAVLFLYPLT 107
>04_04_1513 -
34107700-34107765,34108475-34108551,34108640-34108688,
34109144-34109218,34109447-34109554,34109728-34109835,
34110708-34111256
Length = 343
Score = 87.8 bits (208), Expect = 6e-18
Identities = 68/206 (33%), Positives = 95/206 (46%), Gaps = 43/206 (20%)
Query: 18 KFLQKLGVPNKW-NIVDVMGLDPETLSWVPRPVLSVMLLFP------------------I 58
+ + LGVP DV LD + L VP+PVL+V+ FP +
Sbjct: 139 QLMWSLGVPEDVAEFHDVYSLDADALEMVPQPVLAVVFCFPDPTQLSTIMGFSLYLIYTL 198
Query: 59 SDAYENHKKTEENEILSKGQEVSGNIFYMKQ--NISNACGTIALVHSVANNTDIIELSDG 116
S +L G++ + +F++KQ ++ NACGTIAL+H+V N I L
Sbjct: 199 SPTSVQDASNPSQHLLITGEKET--LFFIKQIESLGNACGTIALLHAVGNAYSEISLCK- 255
Query: 117 HMQKFLNEAKGLDATARGKLLEKSEGIINAHKELAQEGQTNTPSAEDPVNHHFISFVQKD 176
R LEK + + AH A G T D V H+I FV+ D
Sbjct: 256 ----------------RAVFLEKDDDMARAHLSAASAGDTKL---SDDVEEHYICFVECD 296
Query: 177 GALYELDGRKAFPVNHGPTSQETLLE 202
G LYELDG K P+NHGP+S ++LL+
Sbjct: 297 GTLYELDGMKPGPINHGPSSSKSLLQ 322
>02_01_0599 -
4455151-4455915,4455999-4456098,4456176-4456222,
4456566-4456612,4457299-4457461,4458013-4458042
Length = 383
Score = 74.5 bits (175), Expect = 6e-14
Identities = 68/226 (30%), Positives = 119/226 (52%), Gaps = 20/226 (8%)
Query: 9 LESNPDVLNKFLQKLGVPNKWNIVDVMGLDPETLSWVPRPVLSVMLLFPISDAYENHKKT 68
+E++P + + LQ++ + + ++ LD + L+ + +PV +++L+ ++ +K
Sbjct: 60 IENDPGIFTELLQQMQLKGL-QVDELYSLDLDALNDL-QPVYGLIVLYK----WQPPEK- 112
Query: 69 EENEILSKGQEVSGNIFYMKQNISNACGTIALVHSVANNTDIIELSDGHMQKFLNEAKGL 128
+E I ++ N+F+ KQ I+NAC T A+V SV N+ I LS+ ++K AK L
Sbjct: 113 DERPI----KDPIPNLFFAKQIINNACATQAIV-SVLLNSPGITLSE-ELKKLKEFAKDL 166
Query: 129 DATARGKLLEKSEGIINAHKELAQEG--QTNTPSAEDPVNHHFISFVQKDGALYELDGRK 186
+G + SE I A A+ + S +D +HFIS+V DG LYELDG K
Sbjct: 167 PPDLKGLAIVNSESIRLASNSFARPEVPEEQKSSVKDDDVYHFISYVPVDGVLYELDGLK 226
Query: 187 AFPVNHG--PTSQETL--LEDAAKICKEFMAR-DPNEVRFTVIALV 227
P++ G P + L + +E + R NE+RF+V+A++
Sbjct: 227 EGPISLGKCPGGVGDIGWLRMVQPVIQERIDRFSQNEIRFSVMAIL 272
>02_05_1262 +
35312313-35312343,35312840-35312886,35313614-35313660,
35313740-35313842,35313924-35314691
Length = 331
Score = 68.5 bits (160), Expect = 4e-12
Identities = 61/229 (26%), Positives = 107/229 (46%), Gaps = 23/229 (10%)
Query: 9 LESNPDVLNKFLQKLGVPNKWNIVDVMGLDPETLSWVPRPVLSVMLLFPISDAYENHKKT 68
+ES+P V + +Q++ V + ++ LD +++S + RPV ++ LF + +K
Sbjct: 6 IESDPGVFTELIQEMQVKGV-QVEELYSLDVDSISEL-RPVYGLIFLFK----WMAGEKD 59
Query: 69 EENEILSKGQEVSGNIFYMKQNISNACGTIALVHSVANNTDIIELSDGHMQKFLNEAKGL 128
E + ++ + N+F+ Q I NAC T A++ + N E+ G L E G
Sbjct: 60 ERPVV----KDPNPNLFFASQVIPNACATQAILSILMNRP---EIDIGPELSNLKEFTGA 112
Query: 129 DAT-ARGKLLEKSEGIINAHKELAQE----GQTNTPSAEDPVNHHFISFVQKDGALYELD 183
A +G + S+ I AH A+ + +D +HFIS++ +G LYELD
Sbjct: 113 FAPDMKGLAINNSDSIRTAHNSFARPEPFVSDEQRAAGKDDEVYHFISYLPFEGVLYELD 172
Query: 184 GRKAFPV-----NHGPTSQETLLEDAAKICKEFMARDPNEVRFTVIALV 227
G K P+ + GP + L I K +E+RF ++A++
Sbjct: 173 GLKEGPISLGQCSGGPDDLDWLRMVQPVIQKRIERYSQSEIRFNLMAII 221
>01_06_0733 -
31563246-31563462,31563721-31563947,31563983-31564018,
31564750-31564862,31565872-31565950,31566739-31566956,
31567041-31567146,31568518-31568730
Length = 402
Score = 29.9 bits (64), Expect = 1.8
Identities = 31/92 (33%), Positives = 44/92 (47%), Gaps = 6/92 (6%)
Query: 127 GLDATARGK-LLEKSEGIINAHKELAQEGQTNTPSAEDPVNHHFISFV--QKDGALYELD 183
GL AT G LL+ + G+ N KEL+ + S ED H IS V +D +Y +
Sbjct: 160 GLPATYVGHPLLDDAIGL-NMEKELSSVNSMHQRSGEDFRQEHEISPVAPHRDVRVYVDN 218
Query: 184 GRKAFPVNHGPTSQETLLE--DAAKICKEFMA 213
++ P + ETL E DA +C F+A
Sbjct: 219 VVRSGPFPVVLITGETLKERYDAFNVCSRFLA 250
>12_02_0999 -
25134828-25135113,25135479-25135535,25136171-25136296,
25136399-25137289,25137379-25137533
Length = 504
Score = 29.5 bits (63), Expect = 2.4
Identities = 12/42 (28%), Positives = 25/42 (59%)
Query: 157 NTPSAEDPVNHHFISFVQKDGALYELDGRKAFPVNHGPTSQE 198
++PSA ++ F+S + DG++ L+G+ F + GP + +
Sbjct: 273 DSPSATGTMSSAFMSSLSMDGSVASLEGKPPFHLISGPVASD 314
>12_02_0953 - 24736642-24736673,24737104-24737188,24737267-24737386,
24737484-24737549,24737629-24737799,24737901-24737999,
24738075-24738186,24738282-24738343,24738412-24738483,
24738583-24738681,24738764-24738997,24739104-24739178,
24739299-24739386,24739478-24739638,24739734-24739841,
24739934-24741922,24742007-24742279,24742957-24743295,
24743449-24745038,24745166-24745241,24745333-24745412,
24745614-24745679,24745761-24745830,24745899-24746134,
24746149-24746319,24746915-24747097,24747176-24747241,
24747326-24747389,24747472-24747530,24747612-24747699,
24747799-24747891,24747956-24748116,24748215-24748307,
24748405-24748518,24748654-24748773,24748852-24748935,
24749016-24749171,24749518-24750154,24752874-24752929
Length = 2815
Score = 28.7 bits (61), Expect = 4.2
Identities = 13/53 (24%), Positives = 31/53 (58%), Gaps = 1/53 (1%)
Query: 56 FPISDAYENHKKTEENEIL-SKGQEVSGNIFYMKQNISNACGTIALVHSVANN 107
+ +SD + +++ EE E+L ++ +E + + +N+S+ C T+ + V N+
Sbjct: 2692 YRVSDGKDPYEQMEEEELLRNRLEESEQDRSKLAENLSSLCATVLKIAGVRNH 2744
>07_01_0302 - 2169271-2169531,2169778-2169828,2169929-2170381
Length = 254
Score = 28.3 bits (60), Expect = 5.5
Identities = 14/52 (26%), Positives = 22/52 (42%)
Query: 129 DATARGKLLEKSEGIINAHKELAQEGQTNTPSAEDPVNHHFISFVQKDGALY 180
DA A +LE S ++ + + T T ++ H I+ DG LY
Sbjct: 174 DAVATANILESSAPVVGGKQYYSVTVLTRTADGDEGGKHQLITATVNDGKLY 225
Database: rice
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.314 0.132 0.377
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,539,625
Number of Sequences: 37544
Number of extensions: 263265
Number of successful extensions: 425
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 407
Number of HSP's gapped (non-prelim): 13
length of query: 230
length of database: 14,793,348
effective HSP length: 80
effective length of query: 150
effective length of database: 11,789,828
effective search space: 1768474200
effective search space used: 1768474200
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (22.0 bits)
S2: 58 (27.5 bits)
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