GeneModel BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002638-TA|BGIBMGA002638-PA|IPR006153|Sodium/hydrogen
exchanger
         (291 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC15A10.06 |||CPA1 sodium ion/proton antiporter|Schizosaccharo...    61   2e-10
SPAC15A10.11 |ubr11||N-end-recognizing protein |Schizosaccharomy...    26   7.3  

>SPAC15A10.06 |||CPA1 sodium ion/proton
           antiporter|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 569

 Score = 60.9 bits (141), Expect = 2e-10
 Identities = 36/100 (36%), Positives = 57/100 (57%), Gaps = 8/100 (8%)

Query: 4   RAVNIYPLSFLLNLGRKPP-------IPVNFQHMLFFSGLRGAMSFALAIRNTVSEARQA 56
           R +N++PLS LLN   +         IP ++Q MLF++GLRGA+  ALA      E  Q 
Sbjct: 363 RYMNVFPLSNLLNKFHRQRNGNLIDHIPYSYQMMLFWAGLRGAVGVALA-AGFEGENAQT 421

Query: 57  MLTTTSMIVIATVVLQGGAATHALDYLRIPTGQGSNEESE 96
           +  TT ++V+ T+++ GG     L+ L I TG  ++ +S+
Sbjct: 422 LRATTLVVVVLTLIIFGGTTARMLEILHIETGVAADVDSD 461


>SPAC15A10.11 |ubr11||N-end-recognizing protein |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 2052

 Score = 25.8 bits (54), Expect = 7.3
 Identities = 11/34 (32%), Positives = 21/34 (61%), Gaps = 1/34 (2%)

Query: 216  QGDNTLRRTDSDSDLCIDD-PQIPSSIDPQQSMR 248
            QG + LR+TD  S++ +D+   +P ++D +   R
Sbjct: 1359 QGSSLLRKTDVHSEIILDEIYSVPPNLDRESHSR 1392


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.320    0.135    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,213,656
Number of Sequences: 5004
Number of extensions: 45460
Number of successful extensions: 97
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 95
Number of HSP's gapped (non-prelim): 2
length of query: 291
length of database: 2,362,478
effective HSP length: 72
effective length of query: 219
effective length of database: 2,002,190
effective search space: 438479610
effective search space used: 438479610
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 53 (25.4 bits)