GeneModel BLAST Result against mosquito

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002638-TA|BGIBMGA002638-PA|IPR006153|Sodium/hydrogen
exchanger
         (291 letters)

Database: mosquito 
           2123 sequences; 516,269 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY170874-1|AAO34131.1| 1221|Anopheles gambiae alkali metal ion/p...    38   3e-04

>AY170874-1|AAO34131.1| 1221|Anopheles gambiae alkali metal
           ion/proton exchanger 3 protein.
          Length = 1221

 Score = 37.9 bits (84), Expect = 3e-04
 Identities = 26/72 (36%), Positives = 38/72 (52%), Gaps = 2/72 (2%)

Query: 4   RAVNIYPLSFLLNLGRKPPIPVNFQHMLFFSGLRGAMSFALAIRNTVSE--ARQAMLTTT 61
           R + +  LS L N  R   +    Q ++ + GLRGA++FAL +   V+    +   LTTT
Sbjct: 571 RILGVLILSALANRFRIHKLTKVDQFVMSYGGLRGAVAFALVLLVDVNHIPLQPMFLTTT 630

Query: 62  SMIVIATVVLQG 73
             +V  TV LQG
Sbjct: 631 IAVVYFTVFLQG 642


  Database: mosquito
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 516,269
  Number of sequences in database:  2123
  
Lambda     K      H
   0.320    0.135    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 285,286
Number of Sequences: 2123
Number of extensions: 11232
Number of successful extensions: 18
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 16
Number of HSP's gapped (non-prelim): 1
length of query: 291
length of database: 516,269
effective HSP length: 63
effective length of query: 228
effective length of database: 382,520
effective search space: 87214560
effective search space used: 87214560
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 48 (23.4 bits)