GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002638-TA|BGIBMGA002638-PA|IPR006153|Sodium/hydrogen
exchanger
         (291 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ869053-1|ABJ09600.1|  459|Apis mellifera capa-like receptor pr...    22   5.5  
DQ257415-1|ABB81846.1|  430|Apis mellifera yellow-like protein p...    22   5.5  
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    21   9.7  

>DQ869053-1|ABJ09600.1|  459|Apis mellifera capa-like receptor
           protein.
          Length = 459

 Score = 22.2 bits (45), Expect = 5.5
 Identities = 9/27 (33%), Positives = 15/27 (55%)

Query: 244 QQSMRGEIQKAYCLVHRTSSAAATDIL 270
           + ++RGE Q  Y  + +  S  A D+L
Sbjct: 385 ENNLRGETQSNYREMEKRQSVPANDLL 411


>DQ257415-1|ABB81846.1|  430|Apis mellifera yellow-like protein
           protein.
          Length = 430

 Score = 22.2 bits (45), Expect = 5.5
 Identities = 11/26 (42%), Positives = 13/26 (50%)

Query: 22  PIPVNFQHMLFFSGLRGAMSFALAIR 47
           PI VN    LFF  L     FA++ R
Sbjct: 265 PIAVNGYRTLFFHPLSSRREFAVSTR 290


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
           protein.
          Length = 1370

 Score = 21.4 bits (43), Expect = 9.7
 Identities = 12/33 (36%), Positives = 15/33 (45%)

Query: 103 VRSPPDIGLGLRNLDGSQSGNCDRGSRSRMIVR 135
           +R   DIGL  R+ D    GN    S  R  +R
Sbjct: 183 LRDINDIGLNRRDSDDGSDGNDGDESSCRADIR 215


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.320    0.135    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 77,755
Number of Sequences: 429
Number of extensions: 3022
Number of successful extensions: 4
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 1
Number of HSP's gapped (non-prelim): 3
length of query: 291
length of database: 140,377
effective HSP length: 57
effective length of query: 234
effective length of database: 115,924
effective search space: 27126216
effective search space used: 27126216
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 43 (21.4 bits)