GeneModel BLAST Result against tribolium

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002637-TA|BGIBMGA002637-PA|IPR006153|Sodium/hydrogen
exchanger
         (112 letters)

Database: tribolium 
           317 sequences; 114,650 total letters

Searching....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY295879-1|AAQ62692.1| 1464|Tribolium castaneum chitin synthase ...    21   2.2  
AY291477-1|AAQ55061.1| 1464|Tribolium castaneum chitin synthase ...    21   2.2  
AY074761-1|AAL71874.1|  314|Tribolium castaneum ultrabithorax pr...    21   2.2  
DQ490059-1|ABF22614.1|  947|Tribolium castaneum short gastrulati...    20   5.2  
EF222288-1|ABN79648.1|   73|Tribolium castaneum adipokinetic hor...    19   9.0  

>AY295879-1|AAQ62692.1| 1464|Tribolium castaneum chitin synthase
           protein.
          Length = 1464

 Score = 21.4 bits (43), Expect = 2.2
 Identities = 10/22 (45%), Positives = 13/22 (59%)

Query: 8   RDWPLLESALFVLMSYAAFLIA 29
           +D PL  S+LF     A F+IA
Sbjct: 970 QDGPLAPSSLFFFCMAAEFIIA 991


>AY291477-1|AAQ55061.1| 1464|Tribolium castaneum chitin synthase
           CHS2 protein.
          Length = 1464

 Score = 21.4 bits (43), Expect = 2.2
 Identities = 10/22 (45%), Positives = 13/22 (59%)

Query: 8   RDWPLLESALFVLMSYAAFLIA 29
           +D PL  S+LF     A F+IA
Sbjct: 970 QDGPLAPSSLFFFCMAAEFIIA 991


>AY074761-1|AAL71874.1|  314|Tribolium castaneum ultrabithorax
           protein.
          Length = 314

 Score = 21.4 bits (43), Expect = 2.2
 Identities = 8/25 (32%), Positives = 12/25 (48%)

Query: 82  IGVSMFTFPKHHFDPWFIIAGFVSF 106
           +G  +     H F PW  IA  ++F
Sbjct: 193 VGTQIHQQTNHTFYPWMAIADSMTF 217


>DQ490059-1|ABF22614.1|  947|Tribolium castaneum short gastrulation
           protein.
          Length = 947

 Score = 20.2 bits (40), Expect = 5.2
 Identities = 9/19 (47%), Positives = 10/19 (52%)

Query: 89  FPKHHFDPWFIIAGFVSFT 107
           FP   F P+ I  GF S T
Sbjct: 757 FPGSRFHPFLIPTGFDSCT 775


>EF222288-1|ABN79648.1|   73|Tribolium castaneum adipokinetic
          hormone 1 protein.
          Length = 73

 Score = 19.4 bits (38), Expect = 9.0
 Identities = 6/17 (35%), Positives = 10/17 (58%)

Query: 37 VVAVLFCGICQAHYTYN 53
          VV + F G+C A   ++
Sbjct: 8  VVLIAFVGVCTAQLNFS 24


  Database: tribolium
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 114,650
  Number of sequences in database:  317
  
Lambda     K      H
   0.333    0.141    0.462 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,989
Number of Sequences: 317
Number of extensions: 690
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of query: 112
length of database: 114,650
effective HSP length: 49
effective length of query: 63
effective length of database: 99,117
effective search space:  6244371
effective search space used:  6244371
T: 11
A: 40
X1: 15 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 38 (21.1 bits)
S2: 38 (19.4 bits)