GeneModel BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002637-TA|BGIBMGA002637-PA|IPR006153|Sodium/hydrogen
exchanger
         (112 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC15A10.06 |||CPA1 sodium ion/proton antiporter|Schizosaccharo...    73   1e-14
SPBC16H5.02 |pfk1||6-phosphofructokinase |Schizosaccharomyces po...    27   0.70 
SPAP14E8.04 |oma1||metallopeptidase Oma1 |Schizosaccharomyces po...    25   2.2  
SPBC342.01c |alg6|SPBC3F6.06c|glucosyltransferase Alg6|Schizosac...    25   3.8  

>SPAC15A10.06 |||CPA1 sodium ion/proton
           antiporter|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 569

 Score = 72.9 bits (171), Expect = 1e-14
 Identities = 33/107 (30%), Positives = 60/107 (56%)

Query: 1   MTKFTHVRDWPLLESALFVLMSYAAFLIAEVCELTGVVAVLFCGICQAHYTYNNLSSDSR 60
           + K++++R +P +ES + +LM+Y ++  +  C ++GVV++LFCGI   HY + N+S  ++
Sbjct: 254 LLKYSYLRRYPSIESCIILLMAYTSYFFSNGCHMSGVVSLLFCGITLKHYAFFNMSYKAK 313

Query: 61  NRTKQXXXXXXXXXXXXXXTYIGVSMFTFPKHHFDPWFIIAGFVSFT 107
             TK                Y+G+S+FT     + P FI+   V+ T
Sbjct: 314 LSTKYVFRVLAQLSENFIFIYLGMSLFTQVDLVYKPIFILITTVAVT 360


>SPBC16H5.02 |pfk1||6-phosphofructokinase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 942

 Score = 27.1 bits (57), Expect = 0.70
 Identities = 11/26 (42%), Positives = 15/26 (57%)

Query: 82  IGVSMFTFPKHHFDPWFIIAGFVSFT 107
           +G + F F +H  D   II GF +FT
Sbjct: 662 MGFTAFKFQQHKIDALIIIGGFEAFT 687


>SPAP14E8.04 |oma1||metallopeptidase Oma1 |Schizosaccharomyces
          pombe|chr 1|||Manual
          Length = 337

 Score = 25.4 bits (53), Expect = 2.2
 Identities = 11/21 (52%), Positives = 14/21 (66%)

Query: 42 FCGICQAHYTYNNLSSDSRNR 62
          F G+ QA +  NNLS  +RNR
Sbjct: 32 FNGLLQARFQSNNLSWSNRNR 52


>SPBC342.01c |alg6|SPBC3F6.06c|glucosyltransferase
           Alg6|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 506

 Score = 24.6 bits (51), Expect = 3.8
 Identities = 11/32 (34%), Positives = 18/32 (56%), Gaps = 1/32 (3%)

Query: 82  IGVSMFTFPKHHF-DPWFIIAGFVSFTRFFTL 112
           +G+ +F  P   + D W I+   +SF  FFT+
Sbjct: 450 LGIDLFIPPPSRYPDLWVILNVTLSFAGFFTI 481


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.333    0.141    0.462 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 419,973
Number of Sequences: 5004
Number of extensions: 11732
Number of successful extensions: 43
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 40
Number of HSP's gapped (non-prelim): 4
length of query: 112
length of database: 2,362,478
effective HSP length: 64
effective length of query: 48
effective length of database: 2,042,222
effective search space: 98026656
effective search space used: 98026656
T: 11
A: 40
X1: 15 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (21.6 bits)
S2: 48 (23.4 bits)