Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA002637-TA|BGIBMGA002637-PA|IPR006153|Sodium/hydrogen
exchanger
(112 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_03_1606 + 28111158-28111328,28111431-28111549,28111984-281120... 65 1e-11
11_06_0552 - 24913060-24913401,24913535-24913618,24913834-249138... 61 2e-10
05_01_0347 - 2717275-2717613,2717994-2718077,2718185-2718247,271... 55 1e-08
06_02_0133 + 12176059-12176238,12177244-12177362,12177515-121776... 53 6e-08
09_02_0253 - 6319198-6319240,6319364-6319552,6319650-6319995,632... 41 3e-04
03_02_0400 - 8135283-8135490,8136047-8136213,8136289-8136477,813... 31 0.21
12_02_1283 - 27532143-27532517,27532602-27532906,27533053-275333... 30 0.48
07_03_1697 - 28795521-28797328,28797430-28797550 26 7.8
02_03_0022 + 14027429-14027552,14027690-14027739,14027856-140279... 26 7.8
>07_03_1606 +
28111158-28111328,28111431-28111549,28111984-28112024,
28112654-28112713,28112812-28112858,28112939-28113133,
28113236-28113282,28113363-28113429,28113521-28113621,
28113725-28113826,28113904-28114042,28114120-28114182,
28114323-28114406,28114981-28115295
Length = 516
Score = 64.9 bits (151), Expect = 1e-11
Identities = 27/81 (33%), Positives = 45/81 (55%)
Query: 14 ESALFVLMSYAAFLIAEVCELTGVVAVLFCGICQAHYTYNNLSSDSRNRTKQXXXXXXXX 73
E AL +LM+Y ++++AE+ +L+G++ V FCGI +HYT++N++ SR TK
Sbjct: 233 EVALMMLMAYLSYMLAELLDLSGILTVFFCGIVMSHYTWHNVTESSRVTTKHAFATLSFI 292
Query: 74 XXXXXXTYIGVSMFTFPKHHF 94
Y+G+ K F
Sbjct: 293 AETFLFLYVGMDALDIEKWEF 313
>11_06_0552 -
24913060-24913401,24913535-24913618,24913834-24913896,
24913983-24914121,24914225-24914332,24914463-24914563,
24914674-24914740,24914841-24914887,24914963-24915204,
24915297-24915356,24915435-24915532,24916036-24916154,
24916273-24916440
Length = 545
Score = 61.3 bits (142), Expect = 2e-10
Identities = 24/78 (30%), Positives = 44/78 (56%)
Query: 14 ESALFVLMSYAAFLIAEVCELTGVVAVLFCGICQAHYTYNNLSSDSRNRTKQXXXXXXXX 73
E ++ +LM+Y ++++AE+ +L+G++ V FCGI +HYT++N++ SR TK
Sbjct: 251 EVSIMMLMAYLSYMLAELLDLSGILTVFFCGIVMSHYTWHNVTESSRVTTKHAFATLSFI 310
Query: 74 XXXXXXTYIGVSMFTFPK 91
Y+G+ K
Sbjct: 311 AETFLFLYVGMDALDMEK 328
>05_01_0347 -
2717275-2717613,2717994-2718077,2718185-2718247,
2718350-2718488,2719118-2719219,2719324-2719424,
2719915-2719981,2720074-2720120,2720246-2720440,
2720523-2720569,2721242-2721339,2722219-2722337,
2722438-2722611
Length = 524
Score = 54.8 bits (126), Expect = 1e-08
Identities = 22/78 (28%), Positives = 42/78 (53%)
Query: 14 ESALFVLMSYAAFLIAEVCELTGVVAVLFCGICQAHYTYNNLSSDSRNRTKQXXXXXXXX 73
E A+ +LM+Y +++++ + +L+G++ V F GI +HYT++N++ SR TK
Sbjct: 233 EVAIMILMAYLSYMLSMLLDLSGILTVFFSGIVMSHYTWHNVTESSRITTKHTFATLSFI 292
Query: 74 XXXXXXTYIGVSMFTFPK 91
Y+G+ K
Sbjct: 293 AEIFLFLYVGMDALDIEK 310
>06_02_0133 +
12176059-12176238,12177244-12177362,12177515-12177612,
12177811-12177870,12177920-12177990,12178082-12178276,
12178395-12178441,12178532-12178598,12178660-12178665,
12178689-12178789,12179014-12179115,12179182-12179323,
12179578-12179661,12179760-12180080
Length = 530
Score = 52.8 bits (121), Expect = 6e-08
Identities = 24/80 (30%), Positives = 41/80 (51%), Gaps = 2/80 (2%)
Query: 14 ESALFVLMSYAAFLIAE--VCELTGVVAVLFCGICQAHYTYNNLSSDSRNRTKQXXXXXX 71
E AL LM+Y ++++AE +L+G++ V FCGI +HY ++N++ SR T+
Sbjct: 263 EVALMALMAYLSYMLAEGKFLDLSGILMVFFCGIVMSHYAWHNVTESSRITTRHIFATLS 322
Query: 72 XXXXXXXXTYIGVSMFTFPK 91
Y+G+ K
Sbjct: 323 FIAETFIFLYVGMDALDIDK 342
>09_02_0253 -
6319198-6319240,6319364-6319552,6319650-6319995,
6320811-6320893,6320977-6321074,6321384-6321461,
6321891-6322000,6322083-6322180,6323199-6323296,
6323403-6323463,6323688-6323831,6324103-6324206,
6324634-6324787,6324860-6324879,6324967-6325029,
6326521-6326632,6326711-6326796,6326872-6326899,
6327242-6327293,6329034-6329250
Length = 727
Score = 40.7 bits (91), Expect = 3e-04
Identities = 15/35 (42%), Positives = 28/35 (80%)
Query: 26 FLIAEVCELTGVVAVLFCGICQAHYTYNNLSSDSR 60
+++AE L+G+V++LF G+ HYT++NLS++S+
Sbjct: 328 YMLAEGLGLSGIVSILFTGMVMKHYTFSNLSNNSQ 362
>03_02_0400 - 8135283-8135490,8136047-8136213,8136289-8136477,
8136560-8136655,8136746-8136874,8136947-8137123,
8137256-8137366,8138592-8138792,8139022-8139186,
8139293-8139527,8139618-8139745,8139833-8139928,
8140017-8140112,8140252-8140325,8140393-8140462,
8140556-8140665,8140753-8140906,8141040-8141155,
8141259-8141379,8141464-8141641,8142331-8142489,
8142619-8142732,8142821-8143000,8143098-8143177
Length = 1117
Score = 31.1 bits (67), Expect = 0.21
Identities = 24/66 (36%), Positives = 31/66 (46%), Gaps = 9/66 (13%)
Query: 2 TKFTHVRDWPLLES------ALFVLMS---YAAFLIAEVCELTGVVAVLFCGICQAHYTY 52
TK V+ WP+ E+ A+F S YA+FL A VC L C I A Y
Sbjct: 986 TKLEPVKQWPVRENSSPITHAMFSCDSQLIYASFLDATVCIFNASSLRLQCRILPASYLP 1045
Query: 53 NNLSSD 58
N+SS+
Sbjct: 1046 QNISSN 1051
>12_02_1283 -
27532143-27532517,27532602-27532906,27533053-27533311,
27534412-27534618,27534726-27535181,27535866-27535963,
27536657-27536785,27537371-27537605,27538932-27539039,
27539110-27539160,27539261-27539445,27540207-27540274,
27541535-27541600,27541678-27541730,27542536-27542653,
27542743-27542844,27543525-27543682,27543763-27543840,
27543978-27544069,27544308-27544458
Length = 1097
Score = 29.9 bits (64), Expect = 0.48
Identities = 16/50 (32%), Positives = 28/50 (56%), Gaps = 1/50 (2%)
Query: 12 LLESALFVLMSYAAFLIAE-VCELTGVVAVLFCGICQAHYTYNNLSSDSR 60
++E AL + +SY AF A+ E++GV+ V+ G+ A + DS+
Sbjct: 217 IIEIALTLAVSYIAFFTAQDALEVSGVLTVMTLGMFYAAFAKTAFKGDSQ 266
>07_03_1697 - 28795521-28797328,28797430-28797550
Length = 642
Score = 25.8 bits (54), Expect = 7.8
Identities = 17/58 (29%), Positives = 26/58 (44%), Gaps = 3/58 (5%)
Query: 11 PLLESALFVLMSYAAFLI---AEVCELTGVVAVLFCGICQAHYTYNNLSSDSRNRTKQ 65
P+L+ A F++ S L+ A+ T V L CG C A +Y+ D + Q
Sbjct: 422 PVLKGAPFIICSSCFKLVQVPADFAVSTKTVRKLRCGSCSAVLSYSYRDPDRKKHGDQ 479
>02_03_0022 +
14027429-14027552,14027690-14027739,14027856-14027966,
14028100-14028180
Length = 121
Score = 25.8 bits (54), Expect = 7.8
Identities = 11/37 (29%), Positives = 19/37 (51%)
Query: 20 LMSYAAFLIAEVCELTGVVAVLFCGICQAHYTYNNLS 56
++S FL C+ T + + CGIC+ +Y L+
Sbjct: 78 ILSVLDFLNVLYCDQTNKMKTVTCGICRHNYGRTGLA 114
Database: rice
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.333 0.141 0.462
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,476,735
Number of Sequences: 37544
Number of extensions: 64009
Number of successful extensions: 219
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 211
Number of HSP's gapped (non-prelim): 9
length of query: 112
length of database: 14,793,348
effective HSP length: 73
effective length of query: 39
effective length of database: 12,052,636
effective search space: 470052804
effective search space used: 470052804
T: 11
A: 40
X1: 15 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (21.6 bits)
S2: 54 (25.8 bits)
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