GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002637-TA|BGIBMGA002637-PA|IPR006153|Sodium/hydrogen
exchanger
         (112 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related pro...    22   1.5  
DQ667188-1|ABG75740.1|  383|Apis mellifera histamine-gated chlor...    20   6.1  
AF213012-1|AAG43568.1|  492|Apis mellifera acetylcholinesterase ...    20   8.0  
AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase ...    20   8.0  

>DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related
           protein STG-1 protein.
          Length = 397

 Score = 22.2 bits (45), Expect = 1.5
 Identities = 9/29 (31%), Positives = 17/29 (58%)

Query: 10  WPLLESALFVLMSYAAFLIAEVCELTGVV 38
           + + +SA+F   + +  ++AEVC  T  V
Sbjct: 142 YAVTKSAMFFFAATSLLVVAEVCYFTAHV 170


>DQ667188-1|ABG75740.1|  383|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 383

 Score = 20.2 bits (40), Expect = 6.1
 Identities = 9/16 (56%), Positives = 12/16 (75%)

Query: 13  LESALFVLMSYAAFLI 28
           + SAL V+MS+ AF I
Sbjct: 222 IPSALIVVMSWIAFWI 237


>AF213012-1|AAG43568.1|  492|Apis mellifera acetylcholinesterase
           protein.
          Length = 492

 Score = 19.8 bits (39), Expect = 8.0
 Identities = 10/30 (33%), Positives = 12/30 (40%)

Query: 82  IGVSMFTFPKHHFDPWFIIAGFVSFTRFFT 111
           +G   F  P  HF   F   G   +  FFT
Sbjct: 451 VGDYFFICPSIHFAQLFADRGMKVYYYFFT 480


>AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase
           protein.
          Length = 628

 Score = 19.8 bits (39), Expect = 8.0
 Identities = 10/30 (33%), Positives = 12/30 (40%)

Query: 82  IGVSMFTFPKHHFDPWFIIAGFVSFTRFFT 111
           +G   F  P  HF   F   G   +  FFT
Sbjct: 451 VGDYFFICPSIHFAQLFADRGMKVYYYFFT 480


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.333    0.141    0.462 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 26,899
Number of Sequences: 429
Number of extensions: 771
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of query: 112
length of database: 140,377
effective HSP length: 50
effective length of query: 62
effective length of database: 118,927
effective search space:  7373474
effective search space used:  7373474
T: 11
A: 40
X1: 15 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (21.6 bits)
S2: 39 (19.8 bits)