GeneModel BLAST Result against tribolium

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002636-TA|BGIBMGA002636-PA|IPR002090|Na+/H+ exchanger,
isoform 6 (NHE6), IPR004709|Sodium/hydrogen exchanger subfamily,
IPR006153|Sodium/hydrogen exchanger
         (357 letters)

Database: tribolium 
           317 sequences; 114,650 total letters

Searching....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ855491-1|ABH88178.1|  144|Tribolium castaneum chemosensory pro...    22   5.9  
AY800247-1|AAV66724.1|  790|Tribolium castaneum pangolin protein.      22   5.9  
AY800246-1|AAV66723.1|  682|Tribolium castaneum pangolin protein.      22   5.9  
AY675073-1|AAV74190.1|  533|Tribolium castaneum chitinase 5 prot...    22   5.9  

>DQ855491-1|ABH88178.1|  144|Tribolium castaneum chemosensory
           protein 5 protein.
          Length = 144

 Score = 22.2 bits (45), Expect = 5.9
 Identities = 19/65 (29%), Positives = 27/65 (41%), Gaps = 3/65 (4%)

Query: 261 ILPDTLRARCRCEREVATVQAGVDVNLYAMIFGESVLNDAVALVLSGAIQNYETRYSHDG 320
           ILPD L   C    EV   QAG  +  + ++   +  N  VA      I  Y  +Y  D 
Sbjct: 76  ILPDALVTNCSKCSEVQKKQAG-KILTFVLLNYRNEWNQLVAKYDPDGI--YRKQYEIDD 132

Query: 321 GFEIS 325
            ++ S
Sbjct: 133 DYDYS 137


>AY800247-1|AAV66724.1|  790|Tribolium castaneum pangolin protein.
          Length = 790

 Score = 22.2 bits (45), Expect = 5.9
 Identities = 12/57 (21%), Positives = 22/57 (38%)

Query: 102 PGTTYNLSVPPDMLRFHFPASLPITPGDSPIANKTYAYSFRGEIVNVEQNEIDLKAT 158
           P   +++ +PP     H P   P+      I N        G+ V  + ++ + K T
Sbjct: 727 PHEAFDVKLPPPPHPHHQPPRNPVGTNPHDINNPLSVNQLTGQCVRNDSSDTNGKET 783


>AY800246-1|AAV66723.1|  682|Tribolium castaneum pangolin protein.
          Length = 682

 Score = 22.2 bits (45), Expect = 5.9
 Identities = 12/57 (21%), Positives = 22/57 (38%)

Query: 102 PGTTYNLSVPPDMLRFHFPASLPITPGDSPIANKTYAYSFRGEIVNVEQNEIDLKAT 158
           P   +++ +PP     H P   P+      I N        G+ V  + ++ + K T
Sbjct: 619 PHEAFDVKLPPPPHPHHQPPRNPVGTNPHDINNPLSVNQLTGQCVRNDSSDTNGKET 675


>AY675073-1|AAV74190.1|  533|Tribolium castaneum chitinase 5
           protein.
          Length = 533

 Score = 22.2 bits (45), Expect = 5.9
 Identities = 13/30 (43%), Positives = 17/30 (56%), Gaps = 2/30 (6%)

Query: 78  LIVGAIIRYAGSTNHITHINVNPEPGTTYN 107
           LIVG  I + G T  +++ N N  PGT  N
Sbjct: 262 LIVG--IPFYGRTFTLSNSNTNYNPGTYIN 289


  Database: tribolium
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 114,650
  Number of sequences in database:  317
  
Lambda     K      H
   0.325    0.140    0.420 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 70,478
Number of Sequences: 317
Number of extensions: 2854
Number of successful extensions: 7
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 3
Number of HSP's gapped (non-prelim): 6
length of query: 357
length of database: 114,650
effective HSP length: 58
effective length of query: 299
effective length of database: 96,264
effective search space: 28782936
effective search space used: 28782936
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.6 bits)
S2: 44 (21.8 bits)