GeneModel BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002636-TA|BGIBMGA002636-PA|IPR002090|Na+/H+ exchanger,
isoform 6 (NHE6), IPR004709|Sodium/hydrogen exchanger subfamily,
IPR006153|Sodium/hydrogen exchanger
         (357 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC15A10.06 |||CPA1 sodium ion/proton antiporter|Schizosaccharo...    70   6e-13
SPBC2G2.10c |mug110||sequence orphan|Schizosaccharomyces pombe|c...    29   0.76 
SPCC417.09c |||transcription factor |Schizosaccharomyces pombe|c...    26   7.1  

>SPAC15A10.06 |||CPA1 sodium ion/proton
           antiporter|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 569

 Score = 69.7 bits (163), Expect = 6e-13
 Identities = 40/82 (48%), Positives = 54/82 (65%), Gaps = 4/82 (4%)

Query: 175 HAGYCLKR--FFRNLGAILTFAMVGTALSALVIGALMYGCVQLMPASLASSFTFLDTLYF 232
           ++GY L +  FFRN+G ILTFA  GT +SA+ +G L+Y    L   +L  S TF++ L  
Sbjct: 109 NSGYELHQSNFFRNIGTILTFAFAGTFISAVTLGVLVYIFSFLNFENL--SMTFVEALSM 166

Query: 233 GALISPTDPLTVLAIFSQLKPD 254
           GA +S TDP+TVLAIF+  K D
Sbjct: 167 GATLSATDPVTVLAIFNSYKVD 188



 Score = 59.3 bits (137), Expect = 8e-10
 Identities = 42/135 (31%), Positives = 67/135 (49%), Gaps = 9/135 (6%)

Query: 225 TFLDTLYFGALISPTDPLTVLAIFSQLKPDSFNGSYILPDTLRARCRCEREVATVQA--- 281
           T L   + G  IS      ++ IFS L  ++ + +++   ++ A       V  +     
Sbjct: 125 TILTFAFAGTFISAVTLGVLVYIFSFLNFENLSMTFVEALSMGATLSATDPVTVLAIFNS 184

Query: 282 -GVDVNLYAMIFGESVLNDAVALVLSGAIQNYETRYSHDGGFEISGFLGAIGDFIGIFSL 340
             VD  LY +IFGES+LNDAVA+V+   +Q ++ +  H            IG FI  F +
Sbjct: 185 YKVDQKLYTIIFGESILNDAVAIVMFETLQQFQGKTLH-----FFTLFSGIGIFIITFFI 239

Query: 341 SLLVGALMGCLTALI 355
           SLL+G  +G +TAL+
Sbjct: 240 SLLIGVSIGLITALL 254



 Score = 29.1 bits (62), Expect = 1.0
 Identities = 17/54 (31%), Positives = 30/54 (55%), Gaps = 2/54 (3%)

Query: 62  RRVSWLHETGLAVIYGLIVGAIIRYAGSTNHITHINVNPEPGTTYNLSVPPDML 115
           +++  +HET ++V  G++VG IIR   S   I    V+      +N+ +PP +L
Sbjct: 57  KKIRAIHETVISVFVGMVVGLIIRV--SPGLIIQNMVSFHSTYFFNVLLPPIIL 108


>SPBC2G2.10c |mug110||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 248

 Score = 29.5 bits (63), Expect = 0.76
 Identities = 11/31 (35%), Positives = 15/31 (48%)

Query: 120 PASLPITPGDSPIANKTYAYSFRGEIVNVEQ 150
           PA LP  P     +N TY Y F    +N+ +
Sbjct: 176 PALLPEAPNTREASNNTYLYGFSNNFINISR 206


>SPCC417.09c |||transcription factor |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 767

 Score = 26.2 bits (55), Expect = 7.1
 Identities = 15/66 (22%), Positives = 28/66 (42%), Gaps = 1/66 (1%)

Query: 86  YAGSTNHITHINVNPEPGTTYNLSVPPDMLRFHFPASLPITPGDSPIANKTYAYSFRGEI 145
           +A S   + H+ +NP   T   L+   D+L F      P+  G + +     A++ + E+
Sbjct: 637 HAASFIILVHLLINPSEQTIEQLNTAIDILNF-VTDRFPLLKGSTDVITNLRAFAEQSEV 695

Query: 146 VNVEQN 151
                N
Sbjct: 696 YQSRLN 701


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.325    0.140    0.420 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,359,677
Number of Sequences: 5004
Number of extensions: 52499
Number of successful extensions: 164
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 158
Number of HSP's gapped (non-prelim): 5
length of query: 357
length of database: 2,362,478
effective HSP length: 74
effective length of query: 283
effective length of database: 1,992,182
effective search space: 563787506
effective search space used: 563787506
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.6 bits)
S2: 54 (25.8 bits)