Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA002636-TA|BGIBMGA002636-PA|IPR002090|Na+/H+ exchanger,
isoform 6 (NHE6), IPR004709|Sodium/hydrogen exchanger subfamily,
IPR006153|Sodium/hydrogen exchanger
(357 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
09_02_0253 - 6319198-6319240,6319364-6319552,6319650-6319995,632... 69 4e-12
11_06_0552 - 24913060-24913401,24913535-24913618,24913834-249138... 52 7e-07
05_01_0347 - 2717275-2717613,2717994-2718077,2718185-2718247,271... 48 9e-06
06_02_0133 + 12176059-12176238,12177244-12177362,12177515-121776... 48 2e-05
07_03_1606 + 28111158-28111328,28111431-28111549,28111984-281120... 46 4e-05
03_02_0691 + 10432615-10433109,10433155-10433216,10433526-104335... 29 4.3
08_02_0297 + 15469370-15469834,15470644-15470696,15471058-154711... 29 5.7
10_08_0850 + 21050164-21050189,21050874-21050979,21051186-210512... 29 7.5
08_01_0871 + 8502396-8502417,8503606-8503732,8503891-8503990,850... 29 7.5
03_05_0276 + 22646416-22646760,22646858-22647090,22647184-226472... 29 7.5
02_04_0610 + 24335153-24337724,24337835-24338256 29 7.5
01_05_0808 - 25414486-25414677,25415114-25415290,25415839-254159... 29 7.5
>09_02_0253 -
6319198-6319240,6319364-6319552,6319650-6319995,
6320811-6320893,6320977-6321074,6321384-6321461,
6321891-6322000,6322083-6322180,6323199-6323296,
6323403-6323463,6323688-6323831,6324103-6324206,
6324634-6324787,6324860-6324879,6324967-6325029,
6326521-6326632,6326711-6326796,6326872-6326899,
6327242-6327293,6329034-6329250
Length = 727
Score = 69.3 bits (162), Expect = 4e-12
Identities = 50/136 (36%), Positives = 69/136 (50%), Gaps = 14/136 (10%)
Query: 181 KRFFRNLGAILTFAMVGTALSALVIGALMY--GCVQLMPASLASSFTFLDTLYFGALISP 238
K FF N GAI+TFA++GT ++++V G L+Y G LM F++ L FGALIS
Sbjct: 100 KPFFANFGAIVTFAILGTFIASVVTGVLVYLGGLTFLM-----YKLPFVECLMFGALISA 154
Query: 239 TDPLTVLAIFSQLKPD-----SFNGSYILPDTLRARCRCEREVATVQAGVDVNLYAMIFG 293
TDP+TVL+IF +L D G +L D + + QA N + M+F
Sbjct: 155 TDPVTVLSIFQELGTDVNLYALVFGESVLNDAMAISLYRTMSLVRSQAAAGENFFMMVF- 213
Query: 294 ESVLNDAVALVLSGAI 309
L V + SG I
Sbjct: 214 -QFLETFVGSLSSGCI 228
>11_06_0552 -
24913060-24913401,24913535-24913618,24913834-24913896,
24913983-24914121,24914225-24914332,24914463-24914563,
24914674-24914740,24914841-24914887,24914963-24915204,
24915297-24915356,24915435-24915532,24916036-24916154,
24916273-24916440
Length = 545
Score = 52.0 bits (119), Expect = 7e-07
Identities = 27/69 (39%), Positives = 42/69 (60%), Gaps = 5/69 (7%)
Query: 287 LYAMIFGESVLNDAVALVLSGAIQNYETRYSHDGGFEISGFLGAIGDFIGIFSLSLLVGA 346
LY+++FGE V+NDA ++VL A+QN++ F FL IG+F+ +F+ S +G
Sbjct: 174 LYSLVFGEGVVNDATSVVLFNAMQNFDL-----ANFSSVKFLQFIGNFLYLFATSTFLGV 228
Query: 347 LMGCLTALI 355
G L+A I
Sbjct: 229 AAGLLSAYI 237
Score = 37.5 bits (83), Expect = 0.016
Identities = 24/70 (34%), Positives = 33/70 (47%), Gaps = 3/70 (4%)
Query: 181 KRFFRNLGAILTFAMVGTALSALVIGALMYGCVQLMPASLASSFTFLDTLYFGALISPTD 240
K+FFRN I F +GT +S VI G + L+ S D L GA+ S TD
Sbjct: 102 KQFFRNFMTITLFGAIGTLISFSVIS---LGSLGLISRLNIGSLDLGDYLALGAIFSATD 158
Query: 241 PLTVLAIFSQ 250
+ L + +Q
Sbjct: 159 SVCTLQVLNQ 168
>05_01_0347 -
2717275-2717613,2717994-2718077,2718185-2718247,
2718350-2718488,2719118-2719219,2719324-2719424,
2719915-2719981,2720074-2720120,2720246-2720440,
2720523-2720569,2721242-2721339,2722219-2722337,
2722438-2722611
Length = 524
Score = 48.4 bits (110), Expect = 9e-06
Identities = 26/69 (37%), Positives = 42/69 (60%), Gaps = 5/69 (7%)
Query: 287 LYAMIFGESVLNDAVALVLSGAIQNYETRYSHDGGFEISGFLGAIGDFIGIFSLSLLVGA 346
LY+++FGE V+NDA ++VL AI++ + F+ L IG+F+ +F S L+G
Sbjct: 156 LYSLVFGEGVVNDATSVVLFNAIEDIDI-----ANFDSLVLLAFIGNFLYLFFTSTLLGV 210
Query: 347 LMGCLTALI 355
+ G L+A I
Sbjct: 211 VAGLLSAYI 219
Score = 29.5 bits (63), Expect = 4.3
Identities = 14/33 (42%), Positives = 21/33 (63%), Gaps = 1/33 (3%)
Query: 181 KRFFRNLGAILTFAMVGTALSALVIGALMYGCV 213
K+FFRN I+ F VGT +S ++I +L G +
Sbjct: 104 KQFFRNFMTIILFGAVGTLISFVII-SLAIGAI 135
>06_02_0133 +
12176059-12176238,12177244-12177362,12177515-12177612,
12177811-12177870,12177920-12177990,12178082-12178276,
12178395-12178441,12178532-12178598,12178660-12178665,
12178689-12178789,12179014-12179115,12179182-12179323,
12179578-12179661,12179760-12180080
Length = 530
Score = 47.6 bits (108), Expect = 2e-05
Identities = 50/173 (28%), Positives = 76/173 (43%), Gaps = 31/173 (17%)
Query: 181 KRFFRNLGAILTFAMVGTALSALVIGALMYGCVQLMPASLASSFTFLDTLYFGALISPTD 240
K+FF N I++F + G +S ++ GC L P +D Y ++ T
Sbjct: 106 KQFFHNFLTIMSFGIFGVFISVAIVST---GCYWLFPKVGFGDLGAVD--YLDLILFTTT 160
Query: 241 PLTVLAIFSQLKPDSFNGSYILPDTLRARCRCEREVATVQAGVDVNLYAMIFGESVLNDA 300
L AIFS DT+ C +V + LY+++FGE V+NDA
Sbjct: 161 ALG--AIFSST------------DTV-----CTLQV--ISQDETPRLYSLVFGEGVVNDA 199
Query: 301 VALVLSGAIQNYETRYSHDGGFEISGFLGAIGDFIGIFSLSLLVGALMGCLTA 353
++VL AI+N + GG L I DF+ +F S ++G +G TA
Sbjct: 200 TSVVLFNAIKNLDIT-QLKGGVA----LKVISDFLYLFFTSTMLGVTIGLSTA 247
>07_03_1606 +
28111158-28111328,28111431-28111549,28111984-28112024,
28112654-28112713,28112812-28112858,28112939-28113133,
28113236-28113282,28113363-28113429,28113521-28113621,
28113725-28113826,28113904-28114042,28114120-28114182,
28114323-28114406,28114981-28115295
Length = 516
Score = 46.4 bits (105), Expect = 4e-05
Identities = 24/69 (34%), Positives = 41/69 (59%), Gaps = 5/69 (7%)
Query: 287 LYAMIFGESVLNDAVALVLSGAIQNYETRYSHDGGFEISGFLGAIGDFIGIFSLSLLVGA 346
LY+++FGE V+NDA ++VL A+QN++ + + + L +G+F +F S +G
Sbjct: 156 LYSLVFGEGVVNDATSIVLFNALQNFDLVH-----IDAAVVLKFLGNFFYLFLSSTFLGV 210
Query: 347 LMGCLTALI 355
G L+A I
Sbjct: 211 FAGLLSAYI 219
>03_02_0691 +
10432615-10433109,10433155-10433216,10433526-10433565,
10434562-10434807,10435020-10435189,10435323-10435539,
10435615-10435755,10435943-10436026
Length = 484
Score = 29.5 bits (63), Expect = 4.3
Identities = 11/38 (28%), Positives = 22/38 (57%), Gaps = 1/38 (2%)
Query: 61 HRRVSWLHETGLAVIYGLIVGAIIRYAGSTNHITHINV 98
H + W H T +V++GL++G+ R + HI ++ +
Sbjct: 163 HNKWDWKHHTNTSVVHGLVIGS-KRQSDQMVHIRYLQM 199
>08_02_0297 +
15469370-15469834,15470644-15470696,15471058-15471149,
15471515-15471598,15471782-15471876,15474036-15474345,
15474465-15474549,15474802-15474955,15475200-15475541
Length = 559
Score = 29.1 bits (62), Expect = 5.7
Identities = 15/60 (25%), Positives = 25/60 (41%)
Query: 93 ITHINVNPEPGTTYNLSVPPDMLRFHFPASLPITPGDSPIANKTYAYSFRGEIVNVEQNE 152
++HI++ Y L +P D P P +PGD A+ E++ E N+
Sbjct: 130 VSHIDITRRLDLIYGLLLPADSQPHQMPEDAPGSPGDHFEADVRNVEITAAEVIPFESNQ 189
>10_08_0850 + 21050164-21050189,21050874-21050979,21051186-21051257,
21051775-21051828,21052077-21052184,21052653-21052802,
21052914-21053258,21053361-21054801,21054844-21055675,
21057060-21057325,21057530-21059603,21060172-21060442,
21060556-21060990
Length = 2059
Score = 28.7 bits (61), Expect = 7.5
Identities = 12/20 (60%), Positives = 16/20 (80%)
Query: 196 VGTALSALVIGALMYGCVQL 215
V A+SALV+GA++YG V L
Sbjct: 1271 VSAAVSALVVGAIIYGVVSL 1290
>08_01_0871 +
8502396-8502417,8503606-8503732,8503891-8503990,
8504725-8504793,8504870-8505043,8505196-8505373,
8505462-8505594,8505702-8505864,8507031-8507181,
8507266-8507366,8507633-8507788,8508105-8508173,
8508256-8508324,8508403-8508540,8508639-8508767,
8509013-8509053,8510019-8510106,8510199-8510339,
8510428-8510553,8510671-8510736,8510994-8511291,
8511387-8511595,8511689-8511802
Length = 953
Score = 28.7 bits (61), Expect = 7.5
Identities = 17/55 (30%), Positives = 27/55 (49%), Gaps = 2/55 (3%)
Query: 84 IRYAGSTNHITHINVNPEPGTTYNLSVPPDMLRFHFPASLPITPGDSPIANKTYA 138
+R G + T + N E + NLS PP +++ +P S TP S +K+ A
Sbjct: 779 VRVRGRSPAFTALAANFESANSRNLSTPPPVVKKLYPKS--ATPDSSSAPSKSSA 831
>03_05_0276 +
22646416-22646760,22646858-22647090,22647184-22647259,
22647383-22647459,22647559-22647592,22647699-22647848,
22647935-22648069,22648156-22648227
Length = 373
Score = 28.7 bits (61), Expect = 7.5
Identities = 15/37 (40%), Positives = 23/37 (62%), Gaps = 3/37 (8%)
Query: 205 IGALMYGCVQLMPASLASSFTFLDTLYFGALISPTDP 241
+ L YGCV+L+P+ +A+S F+ L L S T+P
Sbjct: 271 LSLLEYGCVRLLPSVVAASVVFVARL---TLDSDTNP 304
>02_04_0610 + 24335153-24337724,24337835-24338256
Length = 997
Score = 28.7 bits (61), Expect = 7.5
Identities = 19/50 (38%), Positives = 27/50 (54%), Gaps = 2/50 (4%)
Query: 307 GAIQNYETRYSHDGGFEISGFL-GAIGDFIGIFSLSLLVGALMGCLTALI 355
G++ N RY GG E+SG + IG+ G+ LSL V L G ++ I
Sbjct: 359 GSLSN-TLRYLVLGGNELSGIVPSCIGNLSGLIQLSLDVNKLTGSISPWI 407
>01_05_0808 -
25414486-25414677,25415114-25415290,25415839-25415928,
25416016-25416081,25416170-25416240,25416375-25416450,
25416567-25420098,25421464-25421834
Length = 1524
Score = 28.7 bits (61), Expect = 7.5
Identities = 11/16 (68%), Positives = 12/16 (75%)
Query: 310 QNYETRYSHDGGFEIS 325
QNY+ RY DG FEIS
Sbjct: 680 QNYQERYGDDGAFEIS 695
Database: rice
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.325 0.140 0.420
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,884,505
Number of Sequences: 37544
Number of extensions: 339187
Number of successful extensions: 858
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 839
Number of HSP's gapped (non-prelim): 20
length of query: 357
length of database: 14,793,348
effective HSP length: 83
effective length of query: 274
effective length of database: 11,677,196
effective search space: 3199551704
effective search space used: 3199551704
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.6 bits)
S2: 60 (28.3 bits)
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