Silkworm BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002635-TA|BGIBMGA002635-PA|IPR007114|Major facilitator
superfamily, IPR005829|Sugar transporter superfamily,
IPR005828|General substrate transporter
         (467 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY769960-1|AAV34676.1|  603|Apis mellifera soluble guanylyl cycl...    25   1.0  
AB181489-1|BAD22772.1|  603|Apis mellifera soluble guanylyl cycl...    25   1.0  
AF498306-5|AAM19330.1|  456|Apis mellifera dopamine receptor typ...    25   1.8  
AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamat...    24   2.4  
AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamat...    24   2.4  
AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamat...    23   5.5  

>AY769960-1|AAV34676.1|  603|Apis mellifera soluble guanylyl cyclase
           beta 1 subunit protein.
          Length = 603

 Score = 25.4 bits (53), Expect = 1.0
 Identities = 10/28 (35%), Positives = 16/28 (57%)

Query: 257 QFIFNCTTGPTILPNGTLEETTRKSIEP 284
           QF+   T+GP ++ N  + E    S+EP
Sbjct: 177 QFLITNTSGPGVVSNPMIAELETLSVEP 204


>AB181489-1|BAD22772.1|  603|Apis mellifera soluble guanylyl cyclase
           beta 1 subunit protein.
          Length = 603

 Score = 25.4 bits (53), Expect = 1.0
 Identities = 10/28 (35%), Positives = 16/28 (57%)

Query: 257 QFIFNCTTGPTILPNGTLEETTRKSIEP 284
           QF+   T+GP ++ N  + E    S+EP
Sbjct: 177 QFLITNTSGPGVVSNPMIAELETLSVEP 204


>AF498306-5|AAM19330.1|  456|Apis mellifera dopamine receptor type
           D2 protein.
          Length = 456

 Score = 24.6 bits (51), Expect = 1.8
 Identities = 12/38 (31%), Positives = 21/38 (55%)

Query: 216 KNRGSWSDLFTEATNKKAMWITLGVFTVQQFCGSAAVV 253
           +NR    DL+  AT++  + I L +F+V    G+  V+
Sbjct: 30  QNRSQEEDLWNLATDRAGLAILLFLFSVATVFGNTLVI 67


>AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamate
           receptor 1 protein.
          Length = 843

 Score = 24.2 bits (50), Expect = 2.4
 Identities = 12/29 (41%), Positives = 15/29 (51%)

Query: 278 TRKSIEPYQESIIIGCVQVATCILSVLLV 306
           TRK  E + ES  IG     TCI+ +  V
Sbjct: 695 TRKIPENFNESKFIGFTMYTTCIIWLAFV 723


>AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 933

 Score = 24.2 bits (50), Expect = 2.4
 Identities = 12/29 (41%), Positives = 15/29 (51%)

Query: 278 TRKSIEPYQESIIIGCVQVATCILSVLLV 306
           TRK  E + ES  IG     TCI+ +  V
Sbjct: 785 TRKIPENFNESKFIGFTMYTTCIIWLAFV 813



 Score = 23.0 bits (47), Expect = 5.5
 Identities = 15/52 (28%), Positives = 24/52 (46%), Gaps = 1/52 (1%)

Query: 371 VTIGEMFPTNVKLYASCIAHIYTGVAMFAVQNLFRVVEQAYKIYTVFWGFTI 422
           + +G +FP + K  ASC  ++Y          LF  V+Q  +   +  G TI
Sbjct: 57  IVLGGLFPVHEKGGASCGPNVYNRGVQRLEAMLF-AVDQINRDEDILPGITI 107


>AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 1040

 Score = 23.0 bits (47), Expect = 5.5
 Identities = 11/29 (37%), Positives = 15/29 (51%)

Query: 278 TRKSIEPYQESIIIGCVQVATCILSVLLV 306
           TRK  E + ES  IG     TC++ +  V
Sbjct: 837 TRKIPEAFNESKHIGFTMYTTCVIWLAFV 865


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.325    0.138    0.415 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 119,366
Number of Sequences: 429
Number of extensions: 4878
Number of successful extensions: 15
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 6
Number of HSP's gapped (non-prelim): 9
length of query: 467
length of database: 140,377
effective HSP length: 60
effective length of query: 407
effective length of database: 114,637
effective search space: 46657259
effective search space used: 46657259
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.6 bits)
S2: 45 (22.2 bits)