GeneModel BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002633-TA|BGIBMGA002633-PA|undefined
         (86 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC12B10.01c ||SPAC31F12.02c, SPAC637.15c|ubiquitin-protein lig...    25   1.1  
SPBC18H10.16 |||amino acid permease, unknown 9|Schizosaccharomyc...    24   2.6  
SPAC7D4.11c |sec39||secretory pathway protein Sec39 |Schizosacch...    24   2.6  
SPAC13G6.06c |||glycine cleavage complex subunit P|Schizosacchar...    23   6.0  
SPAC2G11.13 |atg22||autophagy associated protein Atg22 |Schizosa...    23   8.0  

>SPAC12B10.01c ||SPAC31F12.02c, SPAC637.15c|ubiquitin-protein ligase
            E3 |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1647

 Score = 25.4 bits (53), Expect = 1.1
 Identities = 17/56 (30%), Positives = 27/56 (48%), Gaps = 4/56 (7%)

Query: 15   IANGLGP---LYTPVSSIFFISAATVHRQVAINWIFVWEQCAQFTATNPSRFGQTP 67
            + +GLGP    YT VS  F +++  + R    N  FV++    F +  P   G +P
Sbjct: 1311 VGSGLGPTLEFYTSVSKEFTLNSLDIWRNDQPNSKFVYQASGLFPSPIP-LLGSSP 1365


>SPBC18H10.16 |||amino acid permease, unknown 9|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1050

 Score = 24.2 bits (50), Expect = 2.6
 Identities = 11/30 (36%), Positives = 18/30 (60%), Gaps = 1/30 (3%)

Query: 4   GWVRGLRQYFAIANGLGP-LYTPVSSIFFI 32
           G VRG   Y+A++  +GP L   +  IF++
Sbjct: 137 GMVRGGGAYYAVSRSIGPELGGSIGLIFYV 166


>SPAC7D4.11c |sec39||secretory pathway protein Sec39
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 769

 Score = 24.2 bits (50), Expect = 2.6
 Identities = 8/34 (23%), Positives = 19/34 (55%)

Query: 26  VSSIFFISAATVHRQVAINWIFVWEQCAQFTATN 59
           + ++F  +++     ++ NW FVW++  Q   T+
Sbjct: 206 IITVFINNSSNDPNLISENWDFVWKKLLQLVKTD 239


>SPAC13G6.06c |||glycine cleavage complex subunit
           P|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1017

 Score = 23.0 bits (47), Expect = 6.0
 Identities = 8/23 (34%), Positives = 12/23 (52%)

Query: 58  TNPSRFGQTPITLIDFRCFGHGY 80
           TNP+       T+I  +C  +GY
Sbjct: 668 TNPASAAMAGFTVIPVKCLNNGY 690


>SPAC2G11.13 |atg22||autophagy associated protein Atg22
          |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 529

 Score = 22.6 bits (46), Expect = 8.0
 Identities = 10/19 (52%), Positives = 14/19 (73%)

Query: 17 NGLGPLYTPVSSIFFISAA 35
          N +GPL+  VSSI F ++A
Sbjct: 73 NIVGPLWIDVSSIVFAASA 91


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.329    0.142    0.480 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 409,701
Number of Sequences: 5004
Number of extensions: 13156
Number of successful extensions: 26
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 22
Number of HSP's gapped (non-prelim): 5
length of query: 86
length of database: 2,362,478
effective HSP length: 61
effective length of query: 25
effective length of database: 2,057,234
effective search space: 51430850
effective search space used: 51430850
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.8 bits)
S2: 46 (22.6 bits)