Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA002633-TA|BGIBMGA002633-PA|undefined
(86 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_01_1103 + 10141766-10143583 27 2.5
02_05_0056 + 25461423-25461708,25461986-25462026,25466047-254660... 26 3.3
04_01_0039 + 455760-457631 26 4.3
09_02_0195 + 5643549-5645090 25 5.7
05_04_0340 - 20404703-20404771,20404908-20405093,20405191-204052... 25 5.7
01_06_1597 + 38528241-38528588,38529623-38529721,38529814-385299... 25 5.7
05_01_0368 + 2892476-2893465 25 7.5
07_03_0252 - 15846143-15848473 25 10.0
07_03_0064 + 12995669-12995904,12996299-12996533,12998223-129983... 25 10.0
03_03_0190 + 15293589-15293606,15293790-15293863,15294009-152941... 25 10.0
02_05_0155 - 26340413-26340870,26341029-26341119 25 10.0
>07_01_1103 + 10141766-10143583
Length = 605
Score = 26.6 bits (56), Expect = 2.5
Identities = 11/30 (36%), Positives = 16/30 (53%)
Query: 54 QFTATNPSRFGQTPITLIDFRCFGHGYKYK 83
++ T+P+ +PI L R GHG K K
Sbjct: 141 EYAVTSPAELAASPIRLYRVRFSGHGKKRK 170
>02_05_0056 +
25461423-25461708,25461986-25462026,25466047-25466083,
25466451-25466594,25466882-25466974,25467067-25467155,
25467241-25467537,25467629-25467765,25467860-25467952,
25468061-25468166,25468243-25468395
Length = 491
Score = 26.2 bits (55), Expect = 3.3
Identities = 16/38 (42%), Positives = 22/38 (57%), Gaps = 2/38 (5%)
Query: 9 LRQYFAIAN--GLGPLYTPVSSIFFISAATVHRQVAIN 44
L +YFA+ + LYTPV + SAA RQVA++
Sbjct: 282 LTEYFAVYRLIDMYSLYTPVCTEVSSSAAFGQRQVAVH 319
>04_01_0039 + 455760-457631
Length = 623
Score = 25.8 bits (54), Expect = 4.3
Identities = 12/34 (35%), Positives = 17/34 (50%), Gaps = 1/34 (2%)
Query: 53 AQFTATNPSRFGQTPITLIDFRCFGHGYKYKGLE 86
+++ P + Q + D FGHGY Y GLE
Sbjct: 100 SRYQGVFPIKVNQNKAVVQDLVTFGHGYSY-GLE 132
>09_02_0195 + 5643549-5645090
Length = 513
Score = 25.4 bits (53), Expect = 5.7
Identities = 8/11 (72%), Positives = 9/11 (81%)
Query: 72 DFRCFGHGYKY 82
DF C+GHGY Y
Sbjct: 488 DFFCYGHGYGY 498
>05_04_0340 -
20404703-20404771,20404908-20405093,20405191-20405292,
20405400-20405464,20405551-20405631,20405983-20406055,
20406147-20406248,20406437-20406556,20406690-20406800,
20406889-20406960,20407228-20407341,20407423-20407521,
20408472-20408849
Length = 523
Score = 25.4 bits (53), Expect = 5.7
Identities = 13/40 (32%), Positives = 20/40 (50%)
Query: 7 RGLRQYFAIANGLGPLYTPVSSIFFISAATVHRQVAINWI 46
R L+ +F A G+ T ++S+ + VAINWI
Sbjct: 156 RALKHFFGGAMGVFTTRTLLNSVGVAQSRATSGAVAINWI 195
>01_06_1597 +
38528241-38528588,38529623-38529721,38529814-38529927,
38530349-38530420,38530520-38530630,38530738-38530857,
38531541-38531613,38531997-38532077,38532167-38532231,
38532383-38532484,38532571-38532744,38532873-38532938
Length = 474
Score = 25.4 bits (53), Expect = 5.7
Identities = 13/40 (32%), Positives = 20/40 (50%)
Query: 7 RGLRQYFAIANGLGPLYTPVSSIFFISAATVHRQVAINWI 46
R L+ +F A G+ T +SS+ + +AINWI
Sbjct: 146 RALKHFFGGAMGVFTTRTLLSSVGVSQSKVTPGAIAINWI 185
>05_01_0368 + 2892476-2893465
Length = 329
Score = 25.0 bits (52), Expect = 7.5
Identities = 11/31 (35%), Positives = 16/31 (51%)
Query: 5 WVRGLRQYFAIANGLGPLYTPVSSIFFISAA 35
W+ YF + N L+ VS+I+FI A
Sbjct: 192 WLMRCEHYFDVNNTYPGLWVRVSTIYFIGRA 222
>07_03_0252 - 15846143-15848473
Length = 776
Score = 24.6 bits (51), Expect = 10.0
Identities = 11/30 (36%), Positives = 15/30 (50%)
Query: 54 QFTATNPSRFGQTPITLIDFRCFGHGYKYK 83
++ T P+ +PI L R GHG K K
Sbjct: 144 EYAITAPADLASSPIRLYRVRFSGHGKKRK 173
>07_03_0064 +
12995669-12995904,12996299-12996533,12998223-12998384,
12999446-12999566,13000095-13001608
Length = 755
Score = 24.6 bits (51), Expect = 10.0
Identities = 9/13 (69%), Positives = 10/13 (76%)
Query: 2 ARGWVRGLRQYFA 14
A GWVRG R+Y A
Sbjct: 655 AHGWVRGAREYAA 667
>03_03_0190 +
15293589-15293606,15293790-15293863,15294009-15294138,
15294834-15295088,15295184-15295453
Length = 248
Score = 24.6 bits (51), Expect = 10.0
Identities = 12/21 (57%), Positives = 13/21 (61%)
Query: 16 ANGLGPLYTPVSSIFFISAAT 36
ANG G +TPVSS F A T
Sbjct: 150 ANGTGASHTPVSSFSFGEANT 170
>02_05_0155 - 26340413-26340870,26341029-26341119
Length = 182
Score = 24.6 bits (51), Expect = 10.0
Identities = 15/51 (29%), Positives = 22/51 (43%), Gaps = 2/51 (3%)
Query: 3 RGWVRGLRQYFAIANGL--GPLYTPVSSIFFISAATVHRQVAINWIFVWEQ 51
R RG RQ +A G G L + ++AA R W+ +W+Q
Sbjct: 127 RHGARGQRQRVLVAAGYDSGRLAAMAVATVDVAAAEEVRMAMARWLGIWQQ 177
Database: rice
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.329 0.142 0.480
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,670,174
Number of Sequences: 37544
Number of extensions: 85610
Number of successful extensions: 177
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 169
Number of HSP's gapped (non-prelim): 11
length of query: 86
length of database: 14,793,348
effective HSP length: 65
effective length of query: 21
effective length of database: 12,352,988
effective search space: 259412748
effective search space used: 259412748
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.8 bits)
S2: 51 (24.6 bits)
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