GeneModel BLAST Result against celegans

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002633-TA|BGIBMGA002633-PA|undefined
         (86 letters)

Database: celegans 
           27,539 sequences; 12,573,161 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z54281-4|CAA91046.1|  179|Caenorhabditis elegans Hypothetical pr...    28   0.93 
U50135-3|AAA93454.1|  329|Caenorhabditis elegans Squashed vulva ...    26   3.8  
AF047657-14|AAK18952.1|  331|Caenorhabditis elegans Serpentine r...    26   3.8  
U41263-8|AAC24430.1|  455|Caenorhabditis elegans Hypothetical pr...    25   6.6  
Z66500-9|CAA91307.1|  672|Caenorhabditis elegans Hypothetical pr...    25   8.7  
U41263-7|AAC24431.1|  462|Caenorhabditis elegans Hypothetical pr...    25   8.7  

>Z54281-4|CAA91046.1|  179|Caenorhabditis elegans Hypothetical
           protein F46C5.4 protein.
          Length = 179

 Score = 27.9 bits (59), Expect = 0.93
 Identities = 19/61 (31%), Positives = 26/61 (42%), Gaps = 4/61 (6%)

Query: 28  SIFFISAATVHRQVA--INWIFVWEQCAQFTATNPSRFGQTPITLIDF--RCFGHGYKYK 83
           SIF  + +  H Q    I+ + V   CA  T T    F  TPI + D   +C    + Y 
Sbjct: 67  SIFIFAFSFQHDQFQNNISHVEVSSSCADVTLTTQPSFLNTPIAICDMNDKCVKMDFYYS 126

Query: 84  G 84
           G
Sbjct: 127 G 127


>U50135-3|AAA93454.1|  329|Caenorhabditis elegans Squashed vulva
           protein 7 protein.
          Length = 329

 Score = 25.8 bits (54), Expect = 3.8
 Identities = 15/42 (35%), Positives = 19/42 (45%), Gaps = 3/42 (7%)

Query: 44  NWIFVWEQCAQFTATNPSRFGQTPITLIDFRCFGHGYKYKGL 85
           +++F W   A FT  N S FG    T + FR       YK L
Sbjct: 278 DYVFQW---ANFTGINVSVFGSILYTYVTFRSKSTTISYKPL 316


>AF047657-14|AAK18952.1|  331|Caenorhabditis elegans Serpentine
           receptor, class h protein127 protein.
          Length = 331

 Score = 25.8 bits (54), Expect = 3.8
 Identities = 16/62 (25%), Positives = 25/62 (40%)

Query: 22  LYTPVSSIFFISAATVHRQVAINWIFVWEQCAQFTATNPSRFGQTPITLIDFRCFGHGYK 81
           ++ P+ S+F++     H Q   N IFV      F +T        P  +   R F   +K
Sbjct: 261 VFCPLLSLFYLVPMGYHNQAITNGIFVSVSMHGFLSTVLLLLVHQPYRMATLRIFKCRWK 320

Query: 82  YK 83
            K
Sbjct: 321 VK 322


>U41263-8|AAC24430.1|  455|Caenorhabditis elegans Hypothetical
           protein T19D12.10 protein.
          Length = 455

 Score = 25.0 bits (52), Expect = 6.6
 Identities = 12/36 (33%), Positives = 18/36 (50%)

Query: 8   GLRQYFAIANGLGPLYTPVSSIFFISAATVHRQVAI 43
           G R  + +  G+  L T     FF  +A VHR V++
Sbjct: 184 GWRSIYYLYGGVAFLVTTAFFAFFRDSAQVHRNVSV 219


>Z66500-9|CAA91307.1|  672|Caenorhabditis elegans Hypothetical
           protein T05C12.6a protein.
          Length = 672

 Score = 24.6 bits (51), Expect = 8.7
 Identities = 11/28 (39%), Positives = 17/28 (60%)

Query: 20  GPLYTPVSSIFFISAATVHRQVAINWIF 47
           GP  TP+SS   ++A+ +  Q A+N  F
Sbjct: 630 GPPPTPLSSTMVLAASPIQSQNAVNHDF 657


>U41263-7|AAC24431.1|  462|Caenorhabditis elegans Hypothetical
           protein T19D12.9 protein.
          Length = 462

 Score = 24.6 bits (51), Expect = 8.7
 Identities = 12/35 (34%), Positives = 18/35 (51%)

Query: 8   GLRQYFAIANGLGPLYTPVSSIFFISAATVHRQVA 42
           G R  F +  G+  +   +   FF  +ATVHR V+
Sbjct: 189 GWRYIFYLFGGISVIAHIIFFTFFRDSATVHRNVS 223


  Database: celegans
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 12,573,161
  Number of sequences in database:  27,539
  
Lambda     K      H
   0.329    0.142    0.480 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,218,722
Number of Sequences: 27539
Number of extensions: 72122
Number of successful extensions: 137
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 132
Number of HSP's gapped (non-prelim): 6
length of query: 86
length of database: 12,573,161
effective HSP length: 65
effective length of query: 21
effective length of database: 10,783,126
effective search space: 226445646
effective search space used: 226445646
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.8 bits)
S2: 51 (24.6 bits)