GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002633-TA|BGIBMGA002633-PA|undefined
         (86 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholi...    20   3.8  
DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholi...    20   3.8  
AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.    20   3.8  
AF004169-1|AAC13418.1|  371|Apis mellifera ultraviolet-sensitive...    20   3.8  
AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.          19   6.6  
DQ325130-1|ABD14144.1|  174|Apis mellifera complementary sex det...    19   8.7  
DQ325129-1|ABD14143.1|  174|Apis mellifera complementary sex det...    19   8.7  
DQ325128-1|ABD14142.1|  174|Apis mellifera complementary sex det...    19   8.7  
DQ325127-1|ABD14141.1|  174|Apis mellifera complementary sex det...    19   8.7  
DQ325126-1|ABD14140.1|  174|Apis mellifera complementary sex det...    19   8.7  
DQ325125-1|ABD14139.1|  174|Apis mellifera complementary sex det...    19   8.7  

>DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic
          acetylcholine receptor alpha4subunit protein.
          Length = 569

 Score = 20.2 bits (40), Expect = 3.8
 Identities = 9/24 (37%), Positives = 13/24 (54%)

Query: 21 PLYTPVSSIFFISAATVHRQVAIN 44
          P+      ++F+SA  VH  VA N
Sbjct: 3  PIIGETLRVWFLSALVVHGAVAGN 26


>DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic
          acetylcholine receptor alpha4subunit protein.
          Length = 569

 Score = 20.2 bits (40), Expect = 3.8
 Identities = 9/24 (37%), Positives = 13/24 (54%)

Query: 21 PLYTPVSSIFFISAATVHRQVAIN 44
          P+      ++F+SA  VH  VA N
Sbjct: 3  PIIGETLRVWFLSALVVHGAVAGN 26


>AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor
          protein.
          Length = 996

 Score = 20.2 bits (40), Expect = 3.8
 Identities = 8/13 (61%), Positives = 10/13 (76%)

Query: 25 PVSSIFFISAATV 37
          PV SIFF+S  +V
Sbjct: 3  PVRSIFFLSLVSV 15


>AF004169-1|AAC13418.1|  371|Apis mellifera ultraviolet-sensitive
          opsin protein.
          Length = 371

 Score = 20.2 bits (40), Expect = 3.8
 Identities = 8/30 (26%), Positives = 13/30 (43%)

Query: 44 NWIFVWEQCAQFTATNPSRFGQTPITLIDF 73
          N + +W  CA  +   PS      + + DF
Sbjct: 66 NGLVIWIFCAAKSLRTPSNMFVVNLAICDF 95


>AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.
          Length = 652

 Score = 19.4 bits (38), Expect = 6.6
 Identities = 7/20 (35%), Positives = 12/20 (60%)

Query: 38  HRQVAINWIFVWEQCAQFTA 57
           H++  I+W    E+C + TA
Sbjct: 192 HKETHIDWQPEDEECTEATA 211


>DQ325130-1|ABD14144.1|  174|Apis mellifera complementary sex
           determiner protein.
          Length = 174

 Score = 19.0 bits (37), Expect = 8.7
 Identities = 7/18 (38%), Positives = 10/18 (55%)

Query: 44  NWIFVWEQCAQFTATNPS 61
           +WI + EQ  +F    PS
Sbjct: 130 SWISIQEQIPRFRHIGPS 147


>DQ325129-1|ABD14143.1|  174|Apis mellifera complementary sex
           determiner protein.
          Length = 174

 Score = 19.0 bits (37), Expect = 8.7
 Identities = 7/18 (38%), Positives = 10/18 (55%)

Query: 44  NWIFVWEQCAQFTATNPS 61
           +WI + EQ  +F    PS
Sbjct: 130 SWISIQEQIPRFRHIGPS 147


>DQ325128-1|ABD14142.1|  174|Apis mellifera complementary sex
           determiner protein.
          Length = 174

 Score = 19.0 bits (37), Expect = 8.7
 Identities = 7/18 (38%), Positives = 10/18 (55%)

Query: 44  NWIFVWEQCAQFTATNPS 61
           +WI + EQ  +F    PS
Sbjct: 130 SWISIQEQIPRFRHIGPS 147


>DQ325127-1|ABD14141.1|  174|Apis mellifera complementary sex
           determiner protein.
          Length = 174

 Score = 19.0 bits (37), Expect = 8.7
 Identities = 7/18 (38%), Positives = 10/18 (55%)

Query: 44  NWIFVWEQCAQFTATNPS 61
           +WI + EQ  +F    PS
Sbjct: 130 SWISIQEQIPRFRHIGPS 147


>DQ325126-1|ABD14140.1|  174|Apis mellifera complementary sex
           determiner protein.
          Length = 174

 Score = 19.0 bits (37), Expect = 8.7
 Identities = 7/18 (38%), Positives = 10/18 (55%)

Query: 44  NWIFVWEQCAQFTATNPS 61
           +WI + EQ  +F    PS
Sbjct: 130 SWISIQEQIPRFRHIGPS 147


>DQ325125-1|ABD14139.1|  174|Apis mellifera complementary sex
           determiner protein.
          Length = 174

 Score = 19.0 bits (37), Expect = 8.7
 Identities = 7/18 (38%), Positives = 10/18 (55%)

Query: 44  NWIFVWEQCAQFTATNPS 61
           +WI + EQ  +F    PS
Sbjct: 130 SWISIQEQIPRFRHIGPS 147


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.329    0.142    0.480 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 26,711
Number of Sequences: 429
Number of extensions: 875
Number of successful extensions: 11
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of query: 86
length of database: 140,377
effective HSP length: 48
effective length of query: 38
effective length of database: 119,785
effective search space:  4551830
effective search space used:  4551830
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 37 (20.4 bits)
S2: 37 (19.0 bits)