GeneModel BLAST Result against tribolium

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002632-TA|BGIBMGA002632-PA|IPR002616|Queuine/other
tRNA-ribosyltransferase,
IPR005135|Endonuclease/exonuclease/phosphatase
         (927 letters)

Database: tribolium 
           317 sequences; 114,650 total letters

Searching....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM292369-1|CAL23181.1|  408|Tribolium castaneum gustatory recept...    26   1.4  
AF317551-1|AAG39634.1|  312|Tribolium castaneum distal-less prot...    25   3.1  
AY618898-1|AAU87291.1|  803|Tribolium castaneum receptor tyrosin...    24   5.5  

>AM292369-1|CAL23181.1|  408|Tribolium castaneum gustatory receptor
           candidate 48 protein.
          Length = 408

 Score = 25.8 bits (54), Expect = 1.4
 Identities = 11/32 (34%), Positives = 17/32 (53%)

Query: 826 CKKHTRAYIRHLLNTREMLASVLLSIHNLHHF 857
           CKK    Y   L+N R +  ++ L + N+ HF
Sbjct: 317 CKKKLENYSLQLINHRVVFTAMGLYVLNMEHF 348


>AF317551-1|AAG39634.1|  312|Tribolium castaneum distal-less
           protein.
          Length = 312

 Score = 24.6 bits (51), Expect = 3.1
 Identities = 16/34 (47%), Positives = 22/34 (64%), Gaps = 2/34 (5%)

Query: 313 RREYSSMRLVIRKLARRDQRNAIDELADRAKLAA 346
           R  YSS++L  ++L RR QR     L +RA+LAA
Sbjct: 125 RTIYSSLQL--QQLNRRFQRTQYLALPERAELAA 156


>AY618898-1|AAU87291.1|  803|Tribolium castaneum receptor tyrosine
           kinase Torso-likeprotein protein.
          Length = 803

 Score = 23.8 bits (49), Expect = 5.5
 Identities = 10/34 (29%), Positives = 16/34 (47%)

Query: 832 AYIRHLLNTREMLASVLLSIHNLHHFNEFFVQAR 865
           AYI    N+    A+     HN+   N+F +Q +
Sbjct: 559 AYIDESSNSSNYFANKTYDFHNMSFENDFIIQPK 592


  Database: tribolium
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 114,650
  Number of sequences in database:  317
  
Lambda     K      H
   0.319    0.136    0.405 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 208,303
Number of Sequences: 317
Number of extensions: 8916
Number of successful extensions: 18
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 16
Number of HSP's gapped (non-prelim): 3
length of query: 927
length of database: 114,650
effective HSP length: 63
effective length of query: 864
effective length of database: 94,679
effective search space: 81802656
effective search space used: 81802656
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 47 (23.0 bits)