Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA002632-TA|BGIBMGA002632-PA|IPR002616|Queuine/other
tRNA-ribosyltransferase,
IPR005135|Endonuclease/exonuclease/phosphatase
(927 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC1687.19c |||queuine tRNA-ribosyltransferase|Schizosaccharomy... 71 1e-12
SPAC2F3.13c |||queuine tRNA-ribosyltransferase |Schizosaccharomy... 69 4e-12
SPAC19A8.02 |||transcriptional coactivator |Schizosaccharomyces ... 31 0.74
SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual 31 0.97
SPBC26H8.08c |grn1||GTPase Grn1 |Schizosaccharomyces pombe|chr 2... 30 1.3
SPBC26H8.04c |||DEP domain|Schizosaccharomyces pombe|chr 2|||Manual 30 1.7
SPBC15C4.03 |||Rab geranylgeranyltransferase escort protein |Sch... 30 1.7
SPBC428.06c |||histone deacetylase complex subunit, RXT2 family ... 29 2.2
SPAC2G11.12 |rqh1|hus2, rad12, rec9|RecQ type DNA helicase Rqh1|... 29 3.9
SPBP35G2.06c |nup131|Nup133a|nucleoporin Nup131|Schizosaccharomy... 28 5.2
SPBC106.14c |sda1||SDA1 family protein|Schizosaccharomyces pombe... 28 5.2
SPBC6B1.10 |prp17||splicing factor Prp17|Schizosaccharomyces pom... 28 6.9
SPAC4H3.02c |||sequence orphan|Schizosaccharomyces pombe|chr 1||... 27 9.1
SPAC31A2.07c |dbp10||ATP-dependent RNA helicase Dbp10 |Schizosac... 27 9.1
>SPAC1687.19c |||queuine tRNA-ribosyltransferase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 404
Score = 70.5 bits (165), Expect = 1e-12
Identities = 66/275 (24%), Positives = 120/275 (43%), Gaps = 30/275 (10%)
Query: 619 MITADKYMDLMETFKPDIILAASDGRISLNEKPKRIVKSVERTMALLDSCINKYKASEEL 678
++T + + L + DI++ D +L E KR+ +++ R++ LD CI +K E
Sbjct: 130 LLTPEHSISLQNSIGSDIMMQLDDVVHTLTES-KRMEEAMYRSIRWLDRCIQAHKRPE-- 186
Query: 679 QQSSLVGVIVAANIPHKCEECIRHILKYKETLVGVALAGLTDGSKESYEVSLDKLKEIFS 738
+L +I E C R ++ K G+A+ GL+ G ++ E
Sbjct: 187 -TQNLFCIIQGGLDKRLREICCREMV--KRNTPGIAVGGLSGGEEK------HAFCETVY 237
Query: 739 RVGGSLPNDLLRIVEGSWNPAVIVTAIEHGWDVFDGSYPIKLTNKGHALSLNFDVYRYSG 798
LP++ R + G +V + G D+FD YP + G+AL+
Sbjct: 238 TCTSILPDNKPRYLMGVGYAEDLVVCVALGMDMFDCVYPTRTARFGNALTRK-------- 289
Query: 799 DPCIMDLNDIRYNEDFKPILEGCECLTCKKH-------TRAYIRHLLNTREMLASVLLSI 851
+++L + ++ D P+ EGC C CK TRAY L+ ++E + + L++I
Sbjct: 290 --GVINLRNQKFRNDIGPLEEGCSCPCCKTELEGGWGITRAYFNSLV-SKETVGANLMTI 346
Query: 852 HNLHHFNEFFVQARLHISASTFNIYKKHIITQYEN 886
HN+H + R I F + K+ ++ +
Sbjct: 347 HNVHFQLQLMRDMRESIIKDEFPSFVKNFFHEWNH 381
>SPAC2F3.13c |||queuine tRNA-ribosyltransferase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 348
Score = 68.5 bits (160), Expect = 4e-12
Identities = 91/363 (25%), Positives = 161/363 (44%), Gaps = 50/363 (13%)
Query: 507 PCAAKVLARLLLNRMSKKITGLFGRSKQGCSVVHLTAEVLAKVFPDTQLLWLPLSNSV-Q 565
P A+V + + N++ K T F +V HLT + + + D L++ L + + +
Sbjct: 9 PSGARVSSVTVKNKVLK--TPCFFLPTSRGTVPHLTPDNVEEF--DIPALYVGLEDCLDR 64
Query: 566 LENGVKAQGEG-VAKFAGLPKHVICATLYNINEIVPPGHFELGK--LPLWTKNGKKMITA 622
LE EG + K+ P + TL P G+ + + T +G K +T
Sbjct: 65 LEASPILTNEGTIKKWIAAPS--VQPTLLAPRRTSPLPSVSAGQSHINIVTASGAKKLTN 122
Query: 623 DKYMDLMETFKPDIILAASDGRIS---LNEKPKRIVKSVERTMALLDSCINKYKASEELQ 679
D Y+ + P++++ +D S + KPK + +SV T LL + KA++
Sbjct: 123 DLYIKAVLKLCPELVIPLNDTPTSPPGVKRKPKIVERSVNWTTELLLAL----KATDAFN 178
Query: 680 QSSLVGVIVAANIPHKCEECIRHILKY-KETLVGVALAGLTDGSKESYEVSLDKLKEIFS 738
+ V +P + + I ++ +E + +AGL FS
Sbjct: 179 TTK-----VFFPVPDLDTQYLTPIFQFFQENQLANNIAGLA-----------------FS 216
Query: 739 RVGGSLPNDLLRI----VEGSWNPAVIVTAIEHGWDVFDGSYPIKLTNKGHALSLNF--- 791
LP DL+ + ++ +P I+ I+ G D+ + T+ G AL+ +F
Sbjct: 217 NNVNPLPADLVGLPRLSIQKFESPLEILKCIQRGIDIIVPDMITQATDAGVALTFSFPPP 276
Query: 792 --DVYRYSGDPCIMDLNDIRYNEDFKPILEGCECLTCKKHTRAYIRHLLNTREMLASVLL 849
DV S +D+ D R+ D +P+ GC C TC+++ RAY+RHLL RE++A +LL
Sbjct: 277 SKDVLN-SKIELGLDMWDERFATDMEPLQSGCVCKTCRRYKRAYVRHLLQARELVAWILL 335
Query: 850 SIH 852
++
Sbjct: 336 QLY 338
>SPAC19A8.02 |||transcriptional coactivator |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1213
Score = 31.1 bits (67), Expect = 0.74
Identities = 18/60 (30%), Positives = 30/60 (50%), Gaps = 3/60 (5%)
Query: 751 IVEGSWNPAVIVTAIEHGWDVFDGSYPIKL---TNKGHALSLNFDVYRYSGDPCIMDLND 807
+ G ++P TA+ HG D+F SY ++L N + D++R S ++ LND
Sbjct: 80 VASGFFDPDYATTALLHGQDLFRSSYMVQLQQAKNLRKFIVAPLDLFRDSKVKPLLQLND 139
>SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual
Length = 4717
Score = 30.7 bits (66), Expect = 0.97
Identities = 29/140 (20%), Positives = 57/140 (40%), Gaps = 10/140 (7%)
Query: 543 AEVLAKVFP-DTQLLWLPLSNSVQLENGVKAQGEGVAKFAGLPKHVICATLYNINEIVPP 601
A +LA P +LL L + Q +KA E + L + + CA +N ++
Sbjct: 2161 AIILALFSPRQLKLLRKVLLTNPQFSLSIKADAELLLTLKNLVQKIYCADYFNHMDLKAS 2220
Query: 602 GHFELGKLP---------LWTKNGKKMITADKYMDLMETFKPDIILAASDGRISLNEKPK 652
++ + P + T N + + +++L ET+ ++ ++ + L E+
Sbjct: 2221 RFMDIYEYPVQLREVVGLIQTINDFQSVILTSHLELPETYASGLLFVSAHEILDLTEEVN 2280
Query: 653 RIVKSVERTMALLDSCINKY 672
R+ S + LL S Y
Sbjct: 2281 RLAVSTSNSTYLLKSASAVY 2300
>SPBC26H8.08c |grn1||GTPase Grn1 |Schizosaccharomyces pombe|chr
2|||Manual
Length = 470
Score = 30.3 bits (65), Expect = 1.3
Identities = 20/70 (28%), Positives = 34/70 (48%), Gaps = 2/70 (2%)
Query: 623 DKYMDLMETFKPDIILAASDGRISLNEKPKRIVKSVERTMALLDSCINKYKASEELQQSS 682
+K++ + F P I + ++ G S N K S T++ L + Y A ++L+ S
Sbjct: 213 NKWVTYLRNFFPTIPMRSASG--SGNSNLKHQSASASSTISNLLKSLKSYSAKKKLKSSL 270
Query: 683 LVGVIVAANI 692
VGVI N+
Sbjct: 271 TVGVIGYPNV 280
>SPBC26H8.04c |||DEP domain|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1496
Score = 29.9 bits (64), Expect = 1.7
Identities = 17/64 (26%), Positives = 27/64 (42%), Gaps = 3/64 (4%)
Query: 499 NWRGITLLPCAAKVLARLLLNRMSKKITGLFGRSKQG---CSVVHLTAEVLAKVFPDTQL 555
NW + +L +L + K IT ++ K +H T VL ++ D +
Sbjct: 1349 NWWNVKILEHFDFILDTEAASTFPKSITAVYSWGKPNFRYVQYIHRTGTVLVQIDDDQRF 1408
Query: 556 LWLP 559
LWLP
Sbjct: 1409 LWLP 1412
>SPBC15C4.03 |||Rab geranylgeranyltransferase escort protein
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 459
Score = 29.9 bits (64), Expect = 1.7
Identities = 17/45 (37%), Positives = 28/45 (62%), Gaps = 3/45 (6%)
Query: 246 FYIRKLEDSNCREKFSLSLKN--SFELLKEIE-DEQMDETWDRIR 287
+Y++ L DS C E F+L+ K SF ++E Q+DET +++R
Sbjct: 378 WYLKTLNDSPCNEVFNLATKKLCSFSGCDDLEIIVQVDETLNQLR 422
>SPBC428.06c |||histone deacetylase complex subunit, RXT2 family
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 242
Score = 29.5 bits (63), Expect = 2.2
Identities = 24/114 (21%), Positives = 49/114 (42%), Gaps = 7/114 (6%)
Query: 183 ISPDGKTKNQIDHVAISKTWRSSLLDVRNKRGADIDSDHHLVVAEV-RLKIAVPHRKPDK 241
+SP K ++ + H AIS + + L + +I S H A + +L +A+ P
Sbjct: 103 MSPLTKPQDLLTHPAISSIFEQNYLSILASSALEIISAEHKYTAHLEQLMVALLGDDPSL 162
Query: 242 AARKFYIRKLEDSNCREKFSLSLKNSFELLKEIEDEQMDETWDRIRGAIIKLLR 295
+ + CRE +++++ + E KE W +R +++ +R
Sbjct: 163 PGPPHEVFGISPEQCRE-LTITVQEALEKSKE-----FIRCWTNVRMDLLRAIR 210
>SPAC2G11.12 |rqh1|hus2, rad12, rec9|RecQ type DNA helicase
Rqh1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1328
Score = 28.7 bits (61), Expect = 3.9
Identities = 19/58 (32%), Positives = 30/58 (51%), Gaps = 4/58 (6%)
Query: 727 EVSLDKLKEIFSRVGGSLPNDLLRIVEGSWNPAVIVTAIEHGWDVFDGSYPIKLTNKG 784
E SL +K + S G + L+ I GS + ++ E+GWD +G+ KL N+G
Sbjct: 927 EFSLQAIKLLKSISGKATLLQLMDIFRGSKSAKIV----ENGWDRLEGAGVGKLLNRG 980
>SPBP35G2.06c |nup131|Nup133a|nucleoporin Nup131|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1142
Score = 28.3 bits (60), Expect = 5.2
Identities = 12/48 (25%), Positives = 26/48 (54%)
Query: 691 NIPHKCEECIRHILKYKETLVGVALAGLTDGSKESYEVSLDKLKEIFS 738
++ H + +H LK ++ + + L++ E Y++ L + K+IFS
Sbjct: 1073 HMEHNIHDESKHYLKSEKNFLQSVYSSLSESQVEDYQMELFREKQIFS 1120
>SPBC106.14c |sda1||SDA1 family protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 719
Score = 28.3 bits (60), Expect = 5.2
Identities = 12/52 (23%), Positives = 27/52 (51%), Gaps = 2/52 (3%)
Query: 67 IICARYGHDSTRVRKVTVIQCYAP--TNSASTDVKSQFYEQLGHTLKGIKKQ 116
++C + T + +T++QC+ P + + V+ Y+Q+ T++ KQ
Sbjct: 102 VLCLVLLKNKTVISPITLLQCFFPLFRENPTRGVRELLYQQVSLTIRNANKQ 153
>SPBC6B1.10 |prp17||splicing factor Prp17|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 558
Score = 27.9 bits (59), Expect = 6.9
Identities = 21/72 (29%), Positives = 38/72 (52%), Gaps = 6/72 (8%)
Query: 614 KNGKKMITA--DKYMDLMETFKPDIILAASDGRISLNEKPKRIVKSVERTMAL--LDSCI 669
+NGK+ +T D M E P I +D I+++ P+ ++ +++A LD+CI
Sbjct: 406 ENGKRFVTTSDDSSMRFWEYGTPVPIKFVAD--IAMHSMPRVALRPNGKSIACQSLDNCI 463
Query: 670 NKYKASEELQQS 681
Y A E+ +Q+
Sbjct: 464 YVYSAYEKYRQN 475
>SPAC4H3.02c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 391
Score = 27.5 bits (58), Expect = 9.1
Identities = 19/48 (39%), Positives = 23/48 (47%), Gaps = 1/48 (2%)
Query: 783 KGHALSLNFDVYRYSGDPCIMDLNDIRYNEDFKPILEGC-ECLTCKKH 829
K ALSL F VYR + D ++D+ DF P L E LT H
Sbjct: 317 KLEALSLLFHVYRPTEDRNVIDVKTEIKIRDFTPTLRSAIELLTSGTH 364
>SPAC31A2.07c |dbp10||ATP-dependent RNA helicase Dbp10
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 848
Score = 27.5 bits (58), Expect = 9.1
Identities = 11/30 (36%), Positives = 16/30 (53%)
Query: 124 DINAKMGNDNVDREYYMGQYGATGTINENG 153
+++ K D D+EYYM Y +I E G
Sbjct: 651 ELSKKKTTDFKDKEYYMSHYAPKESIQETG 680
Database: spombe
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.319 0.136 0.405
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,193,028
Number of Sequences: 5004
Number of extensions: 179039
Number of successful extensions: 522
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 511
Number of HSP's gapped (non-prelim): 20
length of query: 927
length of database: 2,362,478
effective HSP length: 79
effective length of query: 848
effective length of database: 1,967,162
effective search space: 1668153376
effective search space used: 1668153376
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 58 (27.5 bits)
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