Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA002632-TA|BGIBMGA002632-PA|IPR002616|Queuine/other
tRNA-ribosyltransferase,
IPR005135|Endonuclease/exonuclease/phosphatase
(927 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
10_01_0243 + 2538994-2539193,2539297-2539471,2539568-2539726,254... 126 6e-29
09_04_0464 + 17820164-17820181,17820972-17821065,17821251-178214... 81 5e-15
04_03_0582 + 17528335-17529790,17529913-17531651,17531814-175320... 41 0.005
11_04_0144 + 14044973-14044984,14045050-14045183,14045329-140458... 36 0.20
08_02_0856 - 21928499-21929626,21929728-21929788,21929950-21930899 33 1.4
03_03_0156 + 14939355-14939435,14939559-14939624,14940331-149404... 32 1.8
03_05_0275 + 22628452-22628694,22630181-22630386,22631368-226316... 31 3.2
12_01_0179 - 1319291-1319332,1319884-1320579,1322759-1323207,132... 31 4.2
11_01_0179 - 1412391-1412863,1412947-1413412,1413504-1414551,141... 31 4.2
01_01_0128 - 1167904-1168749,1168790-1168863,1169419-1169491,117... 31 5.6
11_04_0401 - 17251759-17252208,17252545-17253022,17254235-172542... 30 9.8
03_02_0967 + 12786219-12786305,12786716-12786781,12786897-127869... 30 9.8
>10_01_0243 +
2538994-2539193,2539297-2539471,2539568-2539726,
2540109-2540205,2540420-2540490,2541196-2541247,
2541778-2541826,2541965-2542102,2542653-2542772,
2542861-2542990
Length = 396
Score = 126 bits (305), Expect = 6e-29
Identities = 93/318 (29%), Positives = 145/318 (45%), Gaps = 26/318 (8%)
Query: 576 GVAKFAGLPKHVICATLYNINEIVPPGHF--ELGKLPLWTKNGKKMITADKYMDLMETFK 633
G+ GLP H++ A + E +P + G T G++++ YM+L+ K
Sbjct: 81 GLHHMLGLPDHILIAAAGDSIESLPTSEASNKFGA-SFETPAGRRLVKPSDYMELISCMK 139
Query: 634 PDIILAASDGRISLNEKPKRIVKSVERTMALLDSCINKYKASEELQQSSLVGVIVAANIP 693
P++ + +D + KR SVERT+ LD+CI A +E ++ +GV+V +
Sbjct: 140 PNLWASLAD-EVPAWVTEKRNKVSVERTLRWLDACI----ALDEDSGANTLGVVVGGSSI 194
Query: 694 HKCEECIRHILKYKETLVGVALAGLTDGSKESYEVSLDKLKEIFSRVGGSLPNDLLRIVE 753
+ C + K + G + GL G S I G LP + R+V
Sbjct: 195 ELRKLCATEVSK--RNVSGFWIGGLGFGDSPEERCS------ILDAAVGCLPPEKPRVVS 246
Query: 754 GSWNPAVIVTAIEHGWDVFDGSYPIKLTNKGHALSLNFDVY----------RYSGDPCIM 803
P ++ + G D+FD +Y +LT G AL D+ GD +
Sbjct: 247 RLGLPEEVLEGVAAGIDLFDSTYIYQLTMGGFALIFPIDMVGEKMQNGSLNSSDGDFTKI 306
Query: 804 DLNDIRYNEDFKPILEGCECLTCKKHTRAYIRHLLNTREMLASVLLSIHNLHHFNEFFVQ 863
+L Y +D I++ C C TC+ HTRAY+ HLLN EMLA +LL IHN HH+ FF
Sbjct: 307 NLRATTYRKDTSRIVDSCSCFTCQNHTRAYLNHLLNVHEMLAQILLEIHNTHHYLCFFRL 366
Query: 864 ARLHISASTFNIYKKHII 881
R I F+ +++ +
Sbjct: 367 IRDTIKTGQFDRFRQQFV 384
>09_04_0464 +
17820164-17820181,17820972-17821065,17821251-17821429,
17821959-17822009,17822683-17822739,17822854-17822974,
17823187-17823253,17823342-17823383,17823629-17823734,
17823864-17823974,17824248-17824319,17824423-17824524,
17824597-17824758,17824961-17825119
Length = 446
Score = 80.6 bits (190), Expect = 5e-15
Identities = 68/241 (28%), Positives = 109/241 (45%), Gaps = 24/241 (9%)
Query: 615 NGKKMI-TADKYMDLMETFKPDIILAASDGRISLNEKPKRIVKSVERTMALLDSCINKYK 673
+GK M+ T ++ + + DII+A D + P RI +++ RT+ +D CI +K
Sbjct: 118 DGKPMLLTPEESIHIQNNIGADIIMALDDVVKTTITGP-RIEEAMYRTLRWIDRCIAAHK 176
Query: 674 ASEELQQSSLVGVIVAANIPHKCEECIRHILKYKETLVGVALAGLTDGSKESYEVSLDKL 733
+ +L G++ P + C++ +++ L G A+ GL G + D
Sbjct: 177 KPDV---QNLFGIVQGGLDPVLRDICVKGLVE--RNLPGYAIGGLAGGEDK------DSF 225
Query: 734 KEIFSRVGGSLPNDLLRIVEGSWNPAVIVTAIEHGWDVFDGSYPIKLTNKGHALSLNFDV 793
+ ++ LP D R V G P IV G D++D YP + G AL
Sbjct: 226 WRVVAQCTAGLPEDKPRYVMGVGYPLDIVVCSALGADMYDCVYPTRTARFGTALV----- 280
Query: 794 YRYSGDPCIMDLNDIRYNEDFKPILEGCECLTCKKHTRAYIRHLLNTREMLASVLLSIHN 853
++ L D +PI C C+ CK +TRAY+ H L T++ + S LLS HN
Sbjct: 281 -----PEGVLKLKQNAMATDERPIDPTCPCMVCKNYTRAYL-HCLVTKDAMGSQLLSYHN 334
Query: 854 L 854
L
Sbjct: 335 L 335
>04_03_0582 + 17528335-17529790,17529913-17531651,17531814-17532035,
17532062-17533525
Length = 1626
Score = 40.7 bits (91), Expect = 0.005
Identities = 26/106 (24%), Positives = 50/106 (47%)
Query: 428 EIVKAIKQLKPGKAPGIDNINAEMLKADAPRSASLLYPLIVRIWETEQIPSQWKQGLLVK 487
EI +AI Q+ P K+PG D A + + S + + +++ +P +V
Sbjct: 895 EIAQAIFQIGPLKSPGPDGFPARFYQRNWGTLKSDIILAVRNFFQSGLMPEGVNDTAIVL 954
Query: 488 VPKKGDLSSCDNWRGITLLPCAAKVLARLLLNRMSKKITGLFGRSK 533
+PKK ++R I+L KV+++ L+NR+ + L + +
Sbjct: 955 IPKKDQPIDLKDYRPISLCNVVYKVVSKCLVNRLRPILDDLVSKEQ 1000
>11_04_0144 +
14044973-14044984,14045050-14045183,14045329-14045824,
14046097-14046117,14047504-14047767,14048635-14048715
Length = 335
Score = 35.5 bits (78), Expect = 0.20
Identities = 23/85 (27%), Positives = 37/85 (43%)
Query: 428 EIVKAIKQLKPGKAPGIDNINAEMLKADAPRSASLLYPLIVRIWETEQIPSQWKQGLLVK 487
E+ IK ++P KAP D IN LK P + Y L + +
Sbjct: 226 EVDNLIKVIQPDKAPSPDGINGYFLKKCWPIISQEFYWLAAHFHACYTDLQPINKSFITL 285
Query: 488 VPKKGDLSSCDNWRGITLLPCAAKV 512
VPKK + +++R I+L+ + K+
Sbjct: 286 VPKKSSPETVNDYRPISLMGISLKL 310
>08_02_0856 - 21928499-21929626,21929728-21929788,21929950-21930899
Length = 712
Score = 32.7 bits (71), Expect = 1.4
Identities = 31/108 (28%), Positives = 44/108 (40%), Gaps = 7/108 (6%)
Query: 721 GSKESYEVSLD-KLKEIFSRVGGSLPNDL-LRIVEGSWNPAVIVTAIEHGWDVFD--GSY 776
G + Y V +D +L +F R LP L E SW V V I G D SY
Sbjct: 593 GREFCYLVDMDGELISVFLRNANELPRVFKLNRTEISW---VEVEDIGGGALFLDYRSSY 649
Query: 777 PIKLTNKGHALSLNFDVYRYSGDPCIMDLNDIRYNEDFKPILEGCECL 824
+ + G+ + F Y G P D+N Y+ F ++E C+
Sbjct: 650 GVASPDGGNGNRIYFPRYSKDGKPVFYDMNKKTYSPSFYGVIEPLNCV 697
>03_03_0156 +
14939355-14939435,14939559-14939624,14940331-14940414,
14940796-14940875,14941313-14941358,14941456-14941566,
14942224-14942290,14942615-14942630,14942871-14942931,
14943015-14943145,14943243-14943360,14944053-14944176,
14944517-14944618,14944717-14944785,14946250-14946329
Length = 411
Score = 32.3 bits (70), Expect = 1.8
Identities = 18/70 (25%), Positives = 37/70 (52%), Gaps = 3/70 (4%)
Query: 310 AMLRREYSSMRLVIRKLARRDQRNAIDELADRAKLAAKRQDMKELYD-VTKRIINKKHHP 368
A++R E +++RL +++L R +QR + ++A R + + D V++ + + K P
Sbjct: 13 AVMRAEVAALRLRVQELERENQR--LGKIASRCTCGSSKDDSAASSPVVSESLSSSKQEP 70
Query: 369 RKKPLKDCSG 378
+K C G
Sbjct: 71 QKNVKSHCRG 80
>03_05_0275 +
22628452-22628694,22630181-22630386,22631368-22631659,
22632707-22632814,22632972-22633222,22633316-22633357,
22634478-22634601,22634786-22634851,22635734-22635910
Length = 502
Score = 31.5 bits (68), Expect = 3.2
Identities = 17/51 (33%), Positives = 30/51 (58%), Gaps = 3/51 (5%)
Query: 729 SLDKLKEIFSRVGGSLPNDLLR-IVEGSWNP--AVIVTAIEHGWDVFDGSY 776
++D +K S + G LP+D R +VE WNP ++V++I G+ + + Y
Sbjct: 108 TVDAMKRTISGMLGLLPSDQFRVVVEALWNPFFKLLVSSIMTGYTLRNAEY 158
>12_01_0179 -
1319291-1319332,1319884-1320579,1322759-1323207,
1323291-1324903,1324991-1325077,1326983-1327251
Length = 1051
Score = 31.1 bits (67), Expect = 4.2
Identities = 23/73 (31%), Positives = 37/73 (50%), Gaps = 5/73 (6%)
Query: 71 RYGHDSTRVRKVTVIQCYAPTNSASTDVKSQFYEQLGHTLKGIKKQDIVILMGDINAKMG 130
R G T V TV C AP++ A + V + E +G + KK D + +G IN +
Sbjct: 247 REGKGITSVETDTV-PCVAPSSFAYSGVTVET-EDVG---ENSKKNDELQELGSINPESD 301
Query: 131 NDNVDREYYMGQY 143
N+ V +Y +G++
Sbjct: 302 NNKVQYQYQLGEF 314
>11_01_0179 - 1412391-1412863,1412947-1413412,1413504-1414551,
1414639-1414725,1416244-1416411,1416785-1416958,
1417662-1417720,1418132-1420154,1420549-1420647,
1420998-1421796,1422101-1422120,1422446-1422513
Length = 1827
Score = 31.1 bits (67), Expect = 4.2
Identities = 23/73 (31%), Positives = 37/73 (50%), Gaps = 5/73 (6%)
Query: 71 RYGHDSTRVRKVTVIQCYAPTNSASTDVKSQFYEQLGHTLKGIKKQDIVILMGDINAKMG 130
R G T V TV C AP++ A + V + E +G + KK D + +G IN +
Sbjct: 1294 REGKGITSVETDTV-PCVAPSSFAYSGVTVET-EDVG---ENSKKNDELQELGSINPESD 1348
Query: 131 NDNVDREYYMGQY 143
N+ V +Y +G++
Sbjct: 1349 NNKVQYQYQLGEF 1361
>01_01_0128 -
1167904-1168749,1168790-1168863,1169419-1169491,
1171148-1171398,1171442-1171687,1172220-1172415,
1172796-1172876,1172966-1173169,1173671-1173880,
1173953-1174174,1174437-1174480,1174974-1175052,
1175066-1175227,1175337-1175564,1175786-1175815,
1175905-1176273,1176356-1176571,1177202-1177683,
1177930-1177975
Length = 1352
Score = 30.7 bits (66), Expect = 5.6
Identities = 19/78 (24%), Positives = 36/78 (46%), Gaps = 2/78 (2%)
Query: 831 RAYIRHLLNTREMLASVLLSIHNLHHFNEFFVQARLHISASTFNIYKKHIITQYENINPK 890
R + +L+ +E L + LS HH + + RL NI+++ I+ + E +
Sbjct: 751 RLEVEKILHEQEQLREIELS--KQHHAGDLQEKNRLSRMLEHKNIFQERIVQRREAEFSR 808
Query: 891 LDNEEDKTAPTLVQDKKK 908
L E D+ L+ +K+
Sbjct: 809 LKKERDERTSQLISSRKR 826
>11_04_0401 -
17251759-17252208,17252545-17253022,17254235-17254290,
17254489-17255019
Length = 504
Score = 29.9 bits (64), Expect = 9.8
Identities = 24/106 (22%), Positives = 46/106 (43%)
Query: 428 EIVKAIKQLKPGKAPGIDNINAEMLKADAPRSASLLYPLIVRIWETEQIPSQWKQGLLVK 487
EI AI Q+ P K+ G + A + + + + + +I++T P +V
Sbjct: 392 EIALAIFQIGPLKSLGPNGFPARIYQRNRGIMKQDIVNPVTKIFQTGLTPMGVNDTAIVL 451
Query: 488 VPKKGDLSSCDNWRGITLLPCAAKVLARLLLNRMSKKITGLFGRSK 533
+ ++R I+L KV+ + L+NR+ + L +SK
Sbjct: 452 ILMSDQPVDLKDFRPISLCNVVYKVVFKCLVNRLRTVLDDLVSKSK 497
>03_02_0967 +
12786219-12786305,12786716-12786781,12786897-12786971,
12787054-12787162,12787253-12787299,12787396-12787453,
12788193-12788242,12788459-12788504,12788758-12788808,
12789376-12789478,12789923-12789956,12790210-12790224
Length = 246
Score = 29.9 bits (64), Expect = 9.8
Identities = 21/65 (32%), Positives = 32/65 (49%), Gaps = 4/65 (6%)
Query: 245 KFYIRKLEDSNCREKFSLSLKNSFELLKEIEDEQMDETWDRIRGAIIKLLRKYWGIPIQS 304
K+ I+KL+DS R F S N EL + D +D+ D I + I WG+ I+
Sbjct: 162 KYAIKKLDDSEFRNAF--SKVNLLELAVQHPDLDLDQ--DPIISSFIWDCAAIWGLRIRI 217
Query: 305 KNLGY 309
+G+
Sbjct: 218 LRMGF 222
Database: rice
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.319 0.136 0.405
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 26,190,816
Number of Sequences: 37544
Number of extensions: 1089217
Number of successful extensions: 2435
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 2421
Number of HSP's gapped (non-prelim): 17
length of query: 927
length of database: 14,793,348
effective HSP length: 89
effective length of query: 838
effective length of database: 11,451,932
effective search space: 9596719016
effective search space used: 9596719016
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 64 (29.9 bits)
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