Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA002631-TA|BGIBMGA002631-PA|IPR003591|Leucine-rich
repeat, typical subtype, IPR000483|Cysteine-rich flanking region,
C-terminal, IPR001611|Leucine-rich repeat
(565 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC19C7.03 |cyr1|git2|adenylate cyclase|Schizosaccharomyces pom... 64 7e-11
SPCC1739.11c |cdc11||SIN component scaffold protein Cdc11|Schizo... 55 2e-08
SPAC4A8.12c |sds22||protein phosphatase regulatory subunit Sds22... 55 3e-08
SPAC22H10.10 |alp21|sto1|tubulin specific chaperone cofactor E|S... 47 6e-06
SPAC926.06c |||leucine-rich repeat protein, unknown|Schizosaccha... 47 6e-06
SPBC887.09c |||leucine-rich repeat protein Sog2 |Schizosaccharom... 44 6e-05
SPBC1861.08c |||U2 snRNP-associated protein Lea1 |Schizosaccharo... 30 0.99
SPAC22E12.07 |rna1||Ran GAP Rna1|Schizosaccharomyces pombe|chr 1... 29 1.3
SPCC338.16 |pof3||F-box protein Pof3|Schizosaccharomyces pombe|c... 29 1.7
SPCC4G3.10c |rhp42|rhp4b|DNA repair protein Rhp42|Schizosaccharo... 29 2.3
SPBC6B1.06c |ubp14|ucp2|ubiquitin C-terminal hydrolase Ubp14|Sch... 27 5.3
SPAC806.08c |mod21||gamma tubulin complex subunit Mod21|Schizosa... 27 5.3
SPBC17D1.01 ||SPBC17D11.09|sequence orphan|Schizosaccharomyces p... 27 5.3
SPBC16H5.11c |skb1|rmt5|type II protein arginine N-methyltransfe... 27 7.0
SPBC16G5.15c |fkh2||fork head transcription factor Fkh2 |Schizos... 27 9.2
SPBC19C7.02 |ubr1|SPBC32F12.14|N-end-recognizing protein Ubr1|Sc... 27 9.2
SPAC4G8.03c |||RNA-binding protein|Schizosaccharomyces pombe|chr... 27 9.2
SPCC584.16c |||sequence orphan|Schizosaccharomyces pombe|chr 3||... 27 9.2
>SPBC19C7.03 |cyr1|git2|adenylate cyclase|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1692
Score = 63.7 bits (148), Expect = 7e-11
Identities = 59/220 (26%), Positives = 102/220 (46%), Gaps = 10/220 (4%)
Query: 33 ANANLEIVPIQLNP---EATLMNLTHN-AIDNLLYAFNLYTQLTVLDISYNKILDLGSEN 88
+ +NLE++P+++ P E +N++HN ++D L +L LDIS N + +
Sbjct: 413 SRSNLEVIPVKIYPYAHELISLNVSHNLSLDLPLDFMERCVKLKRLDIS-NNLRSPRGKP 471
Query: 89 FESNSEMRHLNLSNNFLKRLDKDAFVGXXXXXXXXXXXXEISNIHV-QTFRDLSALERLD 147
+ ++ LN+S N + LD F G + + R L L LD
Sbjct: 472 ITALRQLEVLNMSRNDIYELDPLIFSGLSRNSLKELNIANNKLFFLPHSTRYLVNLTYLD 531
Query: 148 FSNNRLVTFEPETFEPLSSLKILSLRNNSILDIPSANLGFVIHLEYLDLSENLIQQVSRH 207
S N VTF P LS L+ L+ +N + I S+ +G ++ L++L L N +
Sbjct: 532 LSYNNFVTF-PLIITELSQLETLNFSHNLLSQI-SSKIGSLVKLKHLYLQFNDLSNRLPQ 589
Query: 208 GLPFLKELKHLDLNNNIIESVDQLGFHSLPSLRHLDLSDN 247
+ LK L+ +DL+ N I ++ L P L ++++ N
Sbjct: 590 EIGLLKNLETIDLSYNAITNIASLS--ECPKLNSINVACN 627
Score = 56.4 bits (130), Expect = 1e-08
Identities = 56/198 (28%), Positives = 94/198 (47%), Gaps = 7/198 (3%)
Query: 70 QLTVLDISYNKILDLGSENFESNSEMRHLNLSNNFLKRLDKDAFVGXXXXXXXXXXXXEI 129
+L L++S+N LDL + E +++ L++SNN K +I
Sbjct: 430 ELISLNVSHNLSLDLPLDFMERCVKLKRLDISNNLRSPRGK-PITALRQLEVLNMSRNDI 488
Query: 130 SNIHVQTFRDLS--ALERLDFSNNRLVTFEPETFEPLSSLKILSLRNNSILDIPSANLGF 187
+ F LS +L+ L+ +NN+L F P + L +L L L N+ + P +
Sbjct: 489 YELDPLIFSGLSRNSLKELNIANNKLF-FLPHSTRYLVNLTYLDLSYNNFVTFPLI-ITE 546
Query: 188 VIHLEYLDLSENLIQQVSRHGLPFLKELKHLDLNNNIIESVDQLGFHSLPSLRHLDLSDN 247
+ LE L+ S NL+ Q+S + L +LKHL L N + + L +L +DLS N
Sbjct: 547 LSQLETLNFSHNLLSQISSK-IGSLVKLKHLYLQFNDLSNRLPQEIGLLKNLETIDLSYN 605
Query: 248 NMTLIPT-SALSKLSNLS 264
+T I + S KL++++
Sbjct: 606 AITNIASLSECPKLNSIN 623
Score = 52.8 bits (121), Expect = 1e-07
Identities = 59/237 (24%), Positives = 109/237 (45%), Gaps = 20/237 (8%)
Query: 45 NPEATLMNLTHNAIDNLLYAFNLYTQLTVLDISYNKILDLGSENFESNSEMRHLNLSNNF 104
NP AT ++ + + + AF+ Y+ L DIS+ K++ L E+ + + ++ N
Sbjct: 636 NPSATFIDFSFCPLTTIDPAFS-YSNLVYFDISHAKLIGLKDSVIETLVNVETVKVNYNH 694
Query: 105 LKRLDKDAFVGXXXXXXXXXXXXEISNIHVQTFRDLSALERLDFSNNRLVTFEPETFEPL 164
+ DA E+S + + L L LD N + F E ++ +
Sbjct: 695 FTSIS-DAISAMQNLKYLSCTNCEMSYVSPNLGK-LKHLVHLDLHANNIKIFPEEVWQ-V 751
Query: 165 SSLKILSLRNNSI--LDIPSAN----LGFVIHLEYL-DLSENLIQQVSRHG--LPFLKEL 215
SSLK+++L +N + + +P A + L+ + LS N + +S +P ++EL
Sbjct: 752 SSLKVVNLSSNILEKIKLPVATSKKLTRTISQLKIMRTLSGNPVSSLSSQEFVMPTVEEL 811
Query: 216 KHLD--LNNNIIESVDQLGFHSLPSLRHLDLSDNNMTLIPTSALSKLSNLSHLYLSG 270
+D L N+ +++ L+ L+LS N +T IP+ S+L HL++SG
Sbjct: 812 YLVDNRLGNDCFTALEYF-----KCLKVLNLSYNYLTEIPSKFFQNFSDLKHLFVSG 863
Score = 49.2 bits (112), Expect = 2e-06
Identities = 41/140 (29%), Positives = 71/140 (50%), Gaps = 8/140 (5%)
Query: 134 VQTFRDLSALERLDFSNNRLVTFEPETFEPLSSLKILSLRNNSILDIPSANLGFVIHLEY 193
++ F + LD S + L + + L L++ +N LD+P + + L+
Sbjct: 398 LRKFSEKKITANLDISRSNLEVIPVKIYPYAHELISLNVSHNLSLDLPLDFMERCVKLKR 457
Query: 194 LDLSENLIQQVSRHGLPF--LKELKHLDLNNNIIESVDQLGFHSLP--SLRHLDLSDNNM 249
LD+S NL S G P L++L+ L+++ N I +D L F L SL+ L++++N +
Sbjct: 458 LDISNNL---RSPRGKPITALRQLEVLNMSRNDIYELDPLIFSGLSRNSLKELNIANNKL 514
Query: 250 TLIPTSALSKLSNLSHLYLS 269
+P S L NL++L LS
Sbjct: 515 FFLPHST-RYLVNLTYLDLS 533
Score = 42.3 bits (95), Expect = 2e-04
Identities = 56/212 (26%), Positives = 92/212 (43%), Gaps = 16/212 (7%)
Query: 71 LTVLDISYNKILDLGSENFESNSEMRHLNLSNNFLKRLDKDAFVGXXXXXXXXX------ 124
L LD+ N I E ++ +S ++ +NLS+N L+++
Sbjct: 731 LVHLDLHANNIKIFPEEVWQVSS-LKVVNLSSNILEKIKLPVATSKKLTRTISQLKIMRT 789
Query: 125 -XXXEISNIHVQTFRDLSALERLDFSNNRLVTFEPETFEPLSSLKILSLRNNSILDIPSA 183
+S++ Q F + +E L +NRL E LK+L+L N + +IPS
Sbjct: 790 LSGNPVSSLSSQEFV-MPTVEELYLVDNRLGNDCFTALEYFKCLKVLNLSYNYLTEIPSK 848
Query: 184 NLGFVIHLEYLDLSENLIQQVSRHGLPFLKELKHLDLNNNIIESVDQLGFHSLPSLRHLD 243
L++L +S N + +S + L+ L N N + S + S SLR LD
Sbjct: 849 FFQNFSDLKHLFVSGNELANLSISSTAQVL-LETLYANGNRLSSFPKNEALS-KSLRFLD 906
Query: 244 LSDNNMTLIPT-----SALSKLSNLSHLYLSG 270
+S NN+ + +L+KL L +L LSG
Sbjct: 907 ISTNNLQNLAVEKAEKKSLTKLPQLEYLNLSG 938
Score = 37.9 bits (84), Expect = 0.004
Identities = 36/136 (26%), Positives = 61/136 (44%), Gaps = 12/136 (8%)
Query: 95 MRHLNLSNNFLKRLDKDAFVGXXXXXXXXXXXXEISNIHVQTFRDLSALERLDFSNNRLV 154
++ LNLS N+L + F E++N+ + + + LE L + NRL
Sbjct: 832 LKVLNLSYNYLTEIPSKFFQNFSDLKHLFVSGNELANLSISSTAQV-LLETLYANGNRLS 890
Query: 155 TFEPETFEPLSSLKILSLRNNSILDIP-----SANLGFVIHLEYLDLSENLIQQVSRH-- 207
+F P+ SL+ L + N++ ++ +L + LEYL+LS N + S H
Sbjct: 891 SF-PKNEALSKSLRFLDISTNNLQNLAVEKAEKKSLTKLPQLEYLNLSGNTWFRFSEHED 949
Query: 208 ---GLPFLKELKHLDL 220
+LK LK L +
Sbjct: 950 TNFTKSYLKNLKFLSI 965
>SPCC1739.11c |cdc11||SIN component scaffold protein
Cdc11|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1045
Score = 55.2 bits (127), Expect = 2e-08
Identities = 53/172 (30%), Positives = 78/172 (45%), Gaps = 13/172 (7%)
Query: 51 MNLTHNAIDNLLYAFNLYTQLTVLDISYNKILDLGSENFESNSEMRHLNLSNNFLKRLDK 110
+N N + +L NL L LDISYN++ DL S +R L + +N L LD
Sbjct: 651 LNAVENRLSSLTSFSNLLN-LQYLDISYNQLEDL--TGLSSLIHLRELKVDSNHLWSLDG 707
Query: 111 DAFV-GXXXXXXXXXXXXEISNIHVQTFRDLSALERLDFSNNRLVTFEPETFEPLSSLKI 169
+ G E+S T +L LE L NN + E E L +L +
Sbjct: 708 IQHLDGLLKLSACNNRIKELS----FTNSNLHRLEELLLGNNEIE--EIEEISSLQNLMV 761
Query: 170 LSLRNNSILDIPSANLGFVIHLEYLDLSENLIQQVSRHGLPFLKELKHLDLN 221
L L NN + ++ ++ +IHL L +S N I Q+ P L+ L ++DLN
Sbjct: 762 LQLDNNKLTNLKASQP--MIHLRILRISNNAIHQLEVDQFPHLRTL-YMDLN 810
Score = 39.1 bits (87), Expect = 0.002
Identities = 47/211 (22%), Positives = 96/211 (45%), Gaps = 16/211 (7%)
Query: 24 DDALRAASCANANLEIVPIQLN-PEATLMNLTHNAIDNLLYAFNLYTQLTVLDISYNKIL 82
D L+ ++C N E+ N + L +N I+ + +L L VL + NK+
Sbjct: 712 DGLLKLSACNNRIKELSFTNSNLHRLEELLLGNNEIEEIEEISSLQN-LMVLQLDNNKLT 770
Query: 83 DLGSENFESNSEMRHLNLSNNFLKRLDKDAFVGXXXXXXXXXXXXEISNIHVQTFRDLSA 142
+L + + +R L +SNN + +L+ D F +++ + D+
Sbjct: 771 NLKAS--QPMIHLRILRISNNAIHQLEVDQFP------HLRTLYMDLNRFNRPP--DIRR 820
Query: 143 LERLDFSNNRLVTFEPETF--EPLSSLKILSLRNNSILDIPSANLGFVIHLEYLDLSENL 200
L+RL + R E F +P ++ L L NN+ + + ++ + + YL+L+
Sbjct: 821 LKRLVNFSFRTQDPEASNFVIQPSLDIRNLYLSNNTFVTLDCKHM--FLGVRYLELANVQ 878
Query: 201 IQQVSRHGLPFLKELKHLDLNNNIIESVDQL 231
+++V ++ + L+ LDL++N I ++ L
Sbjct: 879 LKEVPKYIATSMPNLRVLDLSHNYISDIESL 909
Score = 31.1 bits (67), Expect = 0.43
Identities = 20/56 (35%), Positives = 33/56 (58%), Gaps = 2/56 (3%)
Query: 215 LKHLDLNNNIIESVDQLGFHSLPSLRHLDLSDNNMTLIPTSALSKLSNLSHLYLSG 270
+++L+L N ++ V + S+P+LR LDLS N ++ I +L L + LYL G
Sbjct: 869 VRYLELANVQLKEVPKYIATSMPNLRVLDLSHNYISDI--ESLKPLQMIHRLYLVG 922
Score = 27.9 bits (59), Expect = 4.0
Identities = 18/52 (34%), Positives = 26/52 (50%)
Query: 218 LDLNNNIIESVDQLGFHSLPSLRHLDLSDNNMTLIPTSALSKLSNLSHLYLS 269
LDL N ES Q P+ S NN + +S++ KLSN+S++ S
Sbjct: 85 LDLENMFEESSKQSPPSKSPTKNPSKKSSNNSSRRSSSSVGKLSNVSNMQSS 136
>SPAC4A8.12c |sds22||protein phosphatase regulatory subunit Sds22
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 332
Score = 54.8 bits (126), Expect = 3e-08
Identities = 68/243 (27%), Positives = 108/243 (44%), Gaps = 20/243 (8%)
Query: 32 CANANLEIVPIQLNPEA-TLMNLTHNAIDNLLYAFNLYTQLTVLDISYNKILDLGSENFE 90
C N +I I+ PE T ++L N I + N+ LT LD+S+N I + N
Sbjct: 68 CLRQN-QIKKIESVPETLTELDLYDNLIVRIENLDNV-KNLTYLDLSFNNIKTI--RNIN 123
Query: 91 SNSEMRHLNLSNNFLKRLDKDAFVGXXXXXXXXXXXXEISNIHVQTFRDLSALERLDFSN 150
+ +L N ++R++ G +I I + L LE+L
Sbjct: 124 HLKGLENLFFVQNRIRRIEN--LEGLDRLTNLELGGNKIRVI--ENLDTLVNLEKLWVGK 179
Query: 151 NRLVTFEPETFEPLSSLKILSLRNNSILDIPSANLGFVIH-LEYLDLSENLIQQVSRHGL 209
N++ FE FE L L +LS+++N I NL + H L L +S N + S G+
Sbjct: 180 NKITKFE--NFEKLQKLSLLSIQSNRITQFE--NLACLSHCLRELYVSHNGLTSFS--GI 233
Query: 210 PFLKELKHLDLNNNIIESVDQLGFHSLPSLRHLDLSDNNMTLIP--TSALSKLSNLSHLY 267
L+ L+ LD++NN+I+ + L L +L L S+N ++ LS L L +Y
Sbjct: 234 EVLENLEILDVSNNMIKHLSYLA--GLKNLVELWASNNELSSFQEIEDELSGLKKLETVY 291
Query: 268 LSG 270
G
Sbjct: 292 FEG 294
>SPAC22H10.10 |alp21|sto1|tubulin specific chaperone cofactor
E|Schizosaccharomyces pombe|chr 1|||Manual
Length = 511
Score = 47.2 bits (107), Expect = 6e-06
Identities = 35/122 (28%), Positives = 64/122 (52%), Gaps = 5/122 (4%)
Query: 150 NNRLVTFEPETFEPLSSLKILSLRNNSILDIPSANLGFVIHLEYLDLSENL-IQQVSRHG 208
N++ V + ETF SL++L L N I+ + + + L+ L L+ NL + +
Sbjct: 205 NSKDVQWITETFP---SLEVLYLEANEIILSKATSFKNLQFLQTLSLANNLNLYSADGYA 261
Query: 209 LPFLKELKHLDLNNNIIESVDQLGFHSLPSLRHLDLSDNNMTLIPT-SALSKLSNLSHLY 267
+ + + +L+L++ + V +L H+L L LD+S+NN+ I + L L NL HL
Sbjct: 262 VDVFQGINNLNLSSTSLADVAELPVHTLHKLTFLDISENNIRDIRSLDHLRTLENLKHLR 321
Query: 268 LS 269
++
Sbjct: 322 IT 323
Score = 38.7 bits (86), Expect = 0.002
Identities = 25/85 (29%), Positives = 45/85 (52%), Gaps = 2/85 (2%)
Query: 136 TFRDLSALERLDFSNN-RLVTFEPETFEPLSSLKILSLRNNSILDIPSANLGFVIHLEYL 194
+F++L L+ L +NN L + + + + L+L + S+ D+ + + L +L
Sbjct: 236 SFKNLQFLQTLSLANNLNLYSADGYAVDVFQGINNLNLSSTSLADVAELPVHTLHKLTFL 295
Query: 195 DLSENLIQQV-SRHGLPFLKELKHL 218
D+SEN I+ + S L L+ LKHL
Sbjct: 296 DISENNIRDIRSLDHLRTLENLKHL 320
Score = 37.5 bits (83), Expect = 0.005
Identities = 31/109 (28%), Positives = 57/109 (52%), Gaps = 8/109 (7%)
Query: 142 ALERLDFSNNRLVTFEPETFEPLSSLKILSLRNNSILDIPSANLGFVIH----LEYLDLS 197
+LE L N ++ + +F+ L L+ LSL NN L++ SA+ G+ + + L+LS
Sbjct: 218 SLEVLYLEANEIILSKATSFKNLQFLQTLSLANN--LNLYSAD-GYAVDVFQGINNLNLS 274
Query: 198 ENLIQQVSRHGLPFLKELKHLDLNNNIIESVDQLG-FHSLPSLRHLDLS 245
+ V+ + L +L LD++ N I + L +L +L+HL ++
Sbjct: 275 STSLADVAELPVHTLHKLTFLDISENNIRDIRSLDHLRTLENLKHLRIT 323
Score = 27.5 bits (58), Expect = 5.3
Identities = 49/206 (23%), Positives = 89/206 (43%), Gaps = 29/206 (14%)
Query: 68 YTQLTVLDISYNKILDLGSENFESNSEMRHLNLSNNF-LKRLD---KDAFVGXXXXXXXX 123
+ L VL + N+I+ + +F++ ++ L+L+NN L D D F G
Sbjct: 216 FPSLEVLYLEANEIILSKATSFKNLQFLQTLSLANNLNLYSADGYAVDVFQGINNLNLSS 275
Query: 124 XXXXEISNIHVQTFRDLSALERLDFSNNRLVTFEP----ETFEPLSSLKILSLRNNSILD 179
+++ + V T L L LD S N + T E L L+I N D
Sbjct: 276 TSLADVAELPVHT---LHKLTFLDISENNIRDIRSLDHLRTLENLKHLRITLSYFNKPTD 332
Query: 180 IPS----ANLGFVIHLEYLDLSENLIQQVSRHGLPFLKELKHLDLNNNI--IESVDQL-- 231
I A + ++ L +++S N +++ L + ++ L ++N I +E + ++
Sbjct: 333 IAKLLVIARIPSLVKLNDVNISPN--ERLDAE-LYYTSCIRKLVIDNEIKDVEELTKIEP 389
Query: 232 ------GFHSLPSLR-HLDLSDNNMT 250
H LPS++ HL+ S N+ T
Sbjct: 390 FWEEIWKSHELPSIQFHLEASINDWT 415
>SPAC926.06c |||leucine-rich repeat protein,
unknown|Schizosaccharomyces pombe|chr 1|||Manual
Length = 621
Score = 47.2 bits (107), Expect = 6e-06
Identities = 53/193 (27%), Positives = 84/193 (43%), Gaps = 9/193 (4%)
Query: 82 LDLGSENF-ESNSEMRHLNLSNNFLKRLDKDAFVGXXXXXXXXXXXXEISNIHVQTFRDL 140
+ LGS+++ +S+ H LS + L L KD S +
Sbjct: 270 VSLGSKDYLKSSHPPVHKTLSQSVLV-LSKDGNASSSGGTENQSANSSSSLMEKDAILSS 328
Query: 141 SALERLDF---SNNRLVTFEPETFEPLSSLKILSLRNNSILDIPSANLGFVIHLEYLDLS 197
S+ +L + S+ +L + F L SL L L N + +IP A LG + L L+L+
Sbjct: 329 SSWSQLLYLRCSSCKLKSIPKNVFLSLQSLVSLDLSGNELTEIPYA-LGELPQLCSLNLA 387
Query: 198 ENLIQQVSRHGLPFLKELKHLDLNNNIIESVDQLGFHSLPSLRHLDLSDNNMT-LIPTSA 256
N I L L+ L L+ N + S+ G ++PSL LD+ DN++T ++
Sbjct: 388 SNKITGCRTFYHISLSHLQILVLSRNHLTSLS--GLENVPSLEKLDIRDNSITDVVEFRR 445
Query: 257 LSKLSNLSHLYLS 269
L +N YLS
Sbjct: 446 LVGNTNFEEAYLS 458
Score = 28.7 bits (61), Expect = 2.3
Identities = 22/80 (27%), Positives = 42/80 (52%), Gaps = 3/80 (3%)
Query: 32 CANANLEIVP--IQLNPEATL-MNLTHNAIDNLLYAFNLYTQLTVLDISYNKILDLGSEN 88
C++ L+ +P + L+ ++ + ++L+ N + + YA QL L+++ NKI +
Sbjct: 339 CSSCKLKSIPKNVFLSLQSLVSLDLSGNELTEIPYALGELPQLCSLNLASNKITGCRTFY 398
Query: 89 FESNSEMRHLNLSNNFLKRL 108
S S ++ L LS N L L
Sbjct: 399 HISLSHLQILVLSRNHLTSL 418
>SPBC887.09c |||leucine-rich repeat protein Sog2
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 886
Score = 44.0 bits (99), Expect = 6e-05
Identities = 33/129 (25%), Positives = 60/129 (46%), Gaps = 5/129 (3%)
Query: 74 LDISYNKILDLGSENFES-NSEMRHLNLSNNFLKRLDKDAFVGXXXXXXXXXXXXEISNI 132
LD+S+ + +L E E + L L +NF+K + + +
Sbjct: 32 LDLSHLNLRELPYEQLERIQGRIARLALGHNFIKSIGPEIL--KFTRLRYLNIRSNVLRE 89
Query: 133 HVQTFRDLSALERLDFSNNRLVTFEPETFEPLSSLKILSLRNNSILDIPSANLGFVIHLE 192
++ L +LE LD S N++ PE+F L +LK+LS+ N + ++P+ + + +LE
Sbjct: 90 FPESLCRLESLEILDISRNKIKQL-PESFGALMNLKVLSISKNRLFELPT-YIAHMPNLE 147
Query: 193 YLDLSENLI 201
L + N I
Sbjct: 148 ILKIENNHI 156
Score = 27.1 bits (57), Expect = 7.0
Identities = 18/58 (31%), Positives = 29/58 (50%), Gaps = 1/58 (1%)
Query: 51 MNLTHNAIDNLLYAFNLYTQLTVLDISYNKILDLGSENFESNSEMRHLNLSNNFLKRL 108
+N+ N + + L +LDIS NKI L E+F + ++ L++S N L L
Sbjct: 80 LNIRSNVLREFPESLCRLESLEILDISRNKIKQL-PESFGALMNLKVLSISKNRLFEL 136
>SPBC1861.08c |||U2 snRNP-associated protein Lea1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 239
Score = 29.9 bits (64), Expect = 0.99
Identities = 22/89 (24%), Positives = 39/89 (43%), Gaps = 1/89 (1%)
Query: 133 HVQTFRDLSALERLDFSNNRLVTFEPETFEPLSSLKILSLRNNSILDIPSAN-LGFVIHL 191
++ F + L+ L NNR+ P+ + L +LK LSL N + +I + L L
Sbjct: 55 YLGNFPRMKRLQTLLCGNNRITAIAPDIGKVLPNLKTLSLAQNHLQEIADLDPLASCPQL 114
Query: 192 EYLDLSENLIQQVSRHGLPFLKELKHLDL 220
L +N + Q + L + + L +
Sbjct: 115 TNLSCIDNPVAQKQYYRLYLIWRIPSLHI 143
>SPAC22E12.07 |rna1||Ran GAP Rna1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 386
Score = 29.5 bits (63), Expect = 1.3
Identities = 23/71 (32%), Positives = 34/71 (47%), Gaps = 8/71 (11%)
Query: 201 IQQVSRHGLPFLKELKHLDLNNNII----ESVDQLGFHSLPSLRHLDLSDNNMT----LI 252
I+ + GL + +ELK LDL +N S + S P+LR L L+D ++
Sbjct: 204 IEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAA 263
Query: 253 PTSALSKLSNL 263
A SKL N+
Sbjct: 264 VVDAFSKLENI 274
>SPCC338.16 |pof3||F-box protein Pof3|Schizosaccharomyces pombe|chr
3|||Manual
Length = 577
Score = 29.1 bits (62), Expect = 1.7
Identities = 21/56 (37%), Positives = 31/56 (55%), Gaps = 2/56 (3%)
Query: 193 YLDLSENLIQQVSRHGLPFLKELKHLDLNNNIIESVDQLG-FHSLPSLRHLDLSDN 247
YL LS+N I V + L +LK L L++++ + F SLP L HL++ DN
Sbjct: 433 YLRLSQNDIDNVVKF-LTSCYKLKKLVLHDSLALAPHFFEIFASLPELEHLEIPDN 487
>SPCC4G3.10c |rhp42|rhp4b|DNA repair protein
Rhp42|Schizosaccharomyces pombe|chr 3|||Manual
Length = 686
Score = 28.7 bits (61), Expect = 2.3
Identities = 21/72 (29%), Positives = 36/72 (50%), Gaps = 5/72 (6%)
Query: 475 SVMMNGDVSKLGNGLGYSSRGREQDNKRDVDRYLMIGSSVTNNFHSLNPPWNSVDKNPYY 534
S ++ ++S L N L S+ E+ + D ++ +GSS + F W VD +P
Sbjct: 60 SESLDDNISAL-NSLQRSASSSEKGSDEDNEK---LGSSEDDEFDDDFDTWEQVDLSPNK 115
Query: 535 QEESEE-HIYQQ 545
QE+ ++ HI Q
Sbjct: 116 QEDKKDLHIVTQ 127
>SPBC6B1.06c |ubp14|ucp2|ubiquitin C-terminal hydrolase
Ubp14|Schizosaccharomyces pombe|chr 2|||Manual
Length = 775
Score = 27.5 bits (58), Expect = 5.3
Identities = 18/78 (23%), Positives = 35/78 (44%)
Query: 310 INLQKIWMNDNVKVREVPPRLFHGNPKLTNIYMKNNALETLEASHFPIDRLQELEISGNP 369
+N I+ D + ++ P + K I +A+E L+A FP+ R Q ++
Sbjct: 545 VNEDGIYNFDRLMAKDHPNDEDYLPEKTETIEWNQSAIEQLQAMGFPLVRCQRALLATGN 604
Query: 370 FACNCSLLWLWKLGKDSE 387
++ WL++ +D E
Sbjct: 605 SDTETAMNWLFEHMEDPE 622
>SPAC806.08c |mod21||gamma tubulin complex subunit
Mod21|Schizosaccharomyces pombe|chr 1|||Manual
Length = 618
Score = 27.5 bits (58), Expect = 5.3
Identities = 17/54 (31%), Positives = 28/54 (51%), Gaps = 2/54 (3%)
Query: 500 NKRDVDRYLMIGSSVTNNFHSLNPPWNSVDKNPYYQEESEEHIYQQFAYE-TIP 552
NK + + + + +S + H L P W+S+ + E+SEE + A E TIP
Sbjct: 62 NKNEQEAIIQLLTSCEGD-HWLMPDWSSMPDDETITEDSEEETFNGNANEITIP 114
>SPBC17D1.01 ||SPBC17D11.09|sequence orphan|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 584
Score = 27.5 bits (58), Expect = 5.3
Identities = 14/45 (31%), Positives = 24/45 (53%)
Query: 204 VSRHGLPFLKELKHLDLNNNIIESVDQLGFHSLPSLRHLDLSDNN 248
++ GL L L ++ N E ++ LG ++P L +L S+NN
Sbjct: 81 MTEDGLTKLNLEAFLGVSGNTQELLESLGISAIPDLSNLGASNNN 125
>SPBC16H5.11c |skb1|rmt5|type II protein arginine
N-methyltransferase Skb1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 645
Score = 27.1 bits (57), Expect = 7.0
Identities = 13/38 (34%), Positives = 22/38 (57%)
Query: 22 MCDDALRAASCANANLEIVPIQLNPEATLMNLTHNAID 59
+ D ALRAA ++ ++++ ++ NP A M L N D
Sbjct: 358 LVDCALRAAISSSRTVDMIALEKNPNAFSMLLMRNRQD 395
>SPBC16G5.15c |fkh2||fork head transcription factor Fkh2
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 642
Score = 26.6 bits (56), Expect = 9.2
Identities = 8/18 (44%), Positives = 13/18 (72%)
Query: 547 AYETIPPHRTPEKPHIVY 564
+Y+TI P+R P H++Y
Sbjct: 457 SYDTISPYRNPVNSHLIY 474
>SPBC19C7.02 |ubr1|SPBC32F12.14|N-end-recognizing protein
Ubr1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1958
Score = 26.6 bits (56), Expect = 9.2
Identities = 15/65 (23%), Positives = 28/65 (43%), Gaps = 1/65 (1%)
Query: 370 FACNCSLLWLWKLGKDSETTTKKSGNSSEFLKIDYEDVKCSGPLQLKGMLFVQIPESEFG 429
F C+LLW + G ET + +SE ++ + + G ++L L + +E+
Sbjct: 1723 FLRKCALLWYCRYGVSFETQPNLNFQNSELSRLQTK-MHIPGVIELSNHLCLTASSTEWS 1781
Query: 430 CSSGW 434
W
Sbjct: 1782 LIKHW 1786
>SPAC4G8.03c |||RNA-binding protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 780
Score = 26.6 bits (56), Expect = 9.2
Identities = 15/52 (28%), Positives = 28/52 (53%), Gaps = 5/52 (9%)
Query: 156 FEPETFEPLSSLKILSLRNNSILDIPSANLGFVIHLEYLDLSENLIQQVSRH 207
++P + +PL S K+ +S +D+ S L + L + SEN++Q + H
Sbjct: 314 YQPSSLQPLESRKL-----HSKVDVHSKKLNALSQLNPILRSENVLQNDNHH 360
>SPCC584.16c |||sequence orphan|Schizosaccharomyces pombe|chr
3|||Manual
Length = 231
Score = 26.6 bits (56), Expect = 9.2
Identities = 15/45 (33%), Positives = 29/45 (64%), Gaps = 3/45 (6%)
Query: 65 FNLYTQLTVLDISYNKILD-LGSENFESNSEM--RHLNLSNNFLK 106
FNLY++ +V +S+N +LD + SE+ ++++ RH+ S +K
Sbjct: 68 FNLYSRFSVHTLSHNLVLDNVSSESNKTSAVFCKRHVGSSQVVIK 112
Database: spombe
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,545,189
Number of Sequences: 5004
Number of extensions: 106692
Number of successful extensions: 336
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 294
Number of HSP's gapped (non-prelim): 37
length of query: 565
length of database: 2,362,478
effective HSP length: 76
effective length of query: 489
effective length of database: 1,982,174
effective search space: 969283086
effective search space used: 969283086
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 56 (26.6 bits)
- SilkBase 1999-2023 -