GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002631-TA|BGIBMGA002631-PA|IPR003591|Leucine-rich
repeat, typical subtype, IPR000483|Cysteine-rich flanking region,
C-terminal, IPR001611|Leucine-rich repeat
         (565 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...   108   1e-25
AB252421-1|BAE80739.1|  122|Apis mellifera GB15078 protein.            27   0.41 
AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine rece...    26   0.72 
AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase...    25   2.2  
DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chlor...    24   2.9  
DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chlor...    24   2.9  
AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.        24   3.9  
AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.        24   3.9  
AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.        24   3.9  
DQ435324-1|ABD92639.1|  152|Apis mellifera OBP3 protein.               23   6.7  

>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
           protein.
          Length = 1370

 Score =  108 bits (260), Expect = 1e-25
 Identities = 101/373 (27%), Positives = 172/373 (46%), Gaps = 26/373 (6%)

Query: 50  LMNLTHNAIDNL-LYAFNLYTQLTVLDISYNKILDLGSENFESNSEMRHLNLSNNFLKRL 108
           +++L +N+ID +   AF     L  L++S NK+  +G++ F     +  L LS N +  +
Sbjct: 363 ILDLRNNSIDRIESNAFLPLYNLHTLELSDNKLRTVGAQLFNGLFVLNRLTLSGNAIASI 422

Query: 109 DKDAFVGXXXXXXXXXXXXEISNIHVQTFRDLSALERLDFSNNRLVTFEPETFEPLSSLK 168
           D  AF              E++++     RDL+ L+ LD   NR+  F   +F  L  L 
Sbjct: 423 DPLAFRNCSDLKELDLSGNELTSVP-DALRDLALLKTLDLGENRISNFYNGSFRNLDQLT 481

Query: 169 ILSLRNNSILDIPSANLGFVIHLEYLDLSENLIQQVSRHGLPFLKELKHLDLNNNIIESV 228
            L L  N I ++    L  + +L+ L+L+ N +Q V R+       L+ + L+ N +  +
Sbjct: 482 GLRLIGNDIGNLSRGMLWDLPNLQILNLARNKVQHVERYAFERNMRLEAIRLDGNFLSDI 541

Query: 229 DQLGFHSLPSLRHLDLSDNNMTLIPTSALSKLSNLSHLYLSGXXXXXXXXXXXXXXXXXX 288
           + + F S+ SL  L+LS+N++     + +    NL  L + G                  
Sbjct: 542 NGV-FTSIASLLLLNLSENHIEWFDYAFIP--GNLKWLDIHGNFIESLGNYYKIRDSKVK 598

Query: 289 XXXXXXXXXXERIDSRAFVDNINLQKIWMNDNVKVREVPPRLFHGNPKLTNIYMKNNALE 348
                     E +   +  D++ L  +++N+N  +  V P  F     LT + M  N +E
Sbjct: 599 TLDASHNRITE-LSPLSVPDSVEL--LFINNNY-INLVRPNTFTDKVNLTRVDMYANMIE 654

Query: 349 TLEASHFPI-----DR-LQELEISGNPFACNCSLLWLWKLGKDSETTTKKSGNSSEFLKI 402
           T+E +   +     DR L E  I GNPF CNCS+ WL   G +++T+T+      E+ +I
Sbjct: 655 TMELTSLLLTKVAEDRPLPEFYIGGNPFNCNCSMDWL--PGINNQTSTR------EYPRI 706

Query: 403 -DYEDVKC--SGP 412
            D ++V C  SGP
Sbjct: 707 MDLDNVMCRTSGP 719



 Score = 89.8 bits (213), Expect = 5e-20
 Identities = 95/323 (29%), Positives = 134/323 (41%), Gaps = 10/323 (3%)

Query: 51  MNLTHNAIDNLLYAFNLYTQLTVL---DISYNKILDLGSENFESNSEMRHLNLSNNFLKR 107
           ++L  NAI  +  A +  T LTVL   + SYN +  L    F S  ++R ++L+ N L+ 
Sbjct: 242 LHLQRNAIVEI--AGDALTGLTVLRTFNASYNSLDSLPEGLFASTRDLREIHLAYNGLRD 299

Query: 108 LDKDAFVGXXXXXXXXXXXXEISNIHVQ--TFRDLSALERLDFSNNRLVTFEPETFEPLS 165
           L K  F               + +  V   TF  L  L  L+ S N L   +   F+ L 
Sbjct: 300 LPKGIFTRLEQLLVLNLAGNRLGSDRVDETTFLGLIRLIVLNLSYNMLTHIDARMFKDLF 359

Query: 166 SLKILSLRNNSILDIPSANLGFVIHLEYLDLSENLIQQVSRHGLPFLKELKHLDLNNNII 225
            L+IL LRNNSI  I S     + +L  L+LS+N ++ V       L  L  L L+ N I
Sbjct: 360 FLQILDLRNNSIDRIESNAFLPLYNLHTLELSDNKLRTVGAQLFNGLFVLNRLTLSGNAI 419

Query: 226 ESVDQLGFHSLPSLRHLDLSDNNMTLIPTSALSKLSNLSHLYLSGXXXXXXXXXXXXXXX 285
            S+D L F +   L+ LDLS N +T +P  AL  L+ L  L L G               
Sbjct: 420 ASIDPLAFRNCSDLKELDLSGNELTSVP-DALRDLALLKTLDL-GENRISNFYNGSFRNL 477

Query: 286 XXXXXXXXXXXXXERIDSRAFVDNINLQKIWMNDNVKVREVPPRLFHGNPKLTNIYMKNN 345
                          +      D  NLQ + +  N KV+ V    F  N +L  I +  N
Sbjct: 478 DQLTGLRLIGNDIGNLSRGMLWDLPNLQILNLARN-KVQHVERYAFERNMRLEAIRLDGN 536

Query: 346 ALETLEASHFPIDRLQELEISGN 368
            L  +      I  L  L +S N
Sbjct: 537 FLSDINGVFTSIASLLLLNLSEN 559



 Score = 43.6 bits (98), Expect = 4e-06
 Identities = 36/124 (29%), Positives = 52/124 (41%)

Query: 100 LSNNFLKRLDKDAFVGXXXXXXXXXXXXEISNIHVQTFRDLSALERLDFSNNRLVTFEPE 159
           L  N L+ L    F+G             I +I  +TF  L+ L+ L   +NR+   +  
Sbjct: 801 LDGNVLRELQNHVFIGRKNMRVLYVNGSGIESIQNRTFNGLNNLQILHLEDNRIRELKGF 860

Query: 160 TFEPLSSLKILSLRNNSILDIPSANLGFVIHLEYLDLSENLIQQVSRHGLPFLKELKHLD 219
            FE LS L+ L L+NN I  I +     +  LE L LS N +       +     L  L 
Sbjct: 861 EFERLSHLRELYLQNNLIGFIGNLTFLPLRSLEILRLSGNRLVTFPVWQVTLNARLVELS 920

Query: 220 LNNN 223
           L +N
Sbjct: 921 LGSN 924



 Score = 39.5 bits (88), Expect = 7e-05
 Identities = 22/73 (30%), Positives = 39/73 (53%)

Query: 196 LSENLIQQVSRHGLPFLKELKHLDLNNNIIESVDQLGFHSLPSLRHLDLSDNNMTLIPTS 255
           L  N+++++  H     K ++ L +N + IES+    F+ L +L+ L L DN +  +   
Sbjct: 801 LDGNVLRELQNHVFIGRKNMRVLYVNGSGIESIQNRTFNGLNNLQILHLEDNRIRELKGF 860

Query: 256 ALSKLSNLSHLYL 268
              +LS+L  LYL
Sbjct: 861 EFERLSHLRELYL 873



 Score = 31.1 bits (67), Expect = 0.025
 Identities = 36/111 (32%), Positives = 47/111 (42%), Gaps = 24/111 (21%)

Query: 65  FNLYTQLTVLDISYNKILDLGSENFESNSEMRHLNLSNNFLKRLDKDAFVGXXXXXXXXX 124
           FN    L +L +  N+I +L    FE  S +R L L NN +       F+G         
Sbjct: 838 FNGLNNLQILHLEDNRIRELKGFEFERLSHLRELYLQNNLI------GFIG--------- 882

Query: 125 XXXEISNIHVQTFRDLSALERLDFSNNRLVTFEPETFEPLSSLKILSLRNN 175
                 N+   TF  L +LE L  S NRLVTF        + L  LSL +N
Sbjct: 883 ------NL---TFLPLRSLEILRLSGNRLVTFPVWQVTLNARLVELSLGSN 924



 Score = 29.9 bits (64), Expect = 0.059
 Identities = 31/104 (29%), Positives = 45/104 (43%), Gaps = 26/104 (25%)

Query: 299 ERIDSRAFVDNINLQKIWMNDNVKVREVPPRLFHGNPKLTNIYMKNN------------- 345
           E I +R F    NLQ + + DN ++RE+    F     L  +Y++NN             
Sbjct: 831 ESIQNRTFNGLNNLQILHLEDN-RIRELKGFEFERLSHLRELYLQNNLIGFIGNLTFLPL 889

Query: 346 -ALETLEASH-----FPI------DRLQELEISGNPFACNCSLL 377
            +LE L  S      FP+       RL EL +  NP++C C  L
Sbjct: 890 RSLEILRLSGNRLVTFPVWQVTLNARLVELSLGSNPWSCRCKFL 933


>AB252421-1|BAE80739.1|  122|Apis mellifera GB15078 protein.
          Length = 122

 Score = 27.1 bits (57), Expect = 0.41
 Identities = 11/33 (33%), Positives = 17/33 (51%)

Query: 326 VPPRLFHGNPKLTNIYMKNNALETLEASHFPID 358
           +P  + H NP   N Y   +    ++ASHF +D
Sbjct: 1   MPILIPHRNPASANYYENKDGARIVKASHFELD 33


>AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine
           receptor protein.
          Length = 694

 Score = 26.2 bits (55), Expect = 0.72
 Identities = 12/31 (38%), Positives = 20/31 (64%)

Query: 84  LGSENFESNSEMRHLNLSNNFLKRLDKDAFV 114
           LGSEN+   S++   +  N+++ RL+  AFV
Sbjct: 108 LGSENYTGISDLFVFDDLNDYINRLNYSAFV 138


>AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase
           protein.
          Length = 1143

 Score = 24.6 bits (51), Expect = 2.2
 Identities = 9/24 (37%), Positives = 15/24 (62%)

Query: 379 LWKLGKDSETTTKKSGNSSEFLKI 402
           +WK G+D ++T+KK      F +I
Sbjct: 426 VWKKGRDKKSTSKKPRRKFHFKQI 449


>DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 24.2 bits (50), Expect = 2.9
 Identities = 10/25 (40%), Positives = 13/25 (52%)

Query: 357 IDRLQELEISGNPFACNCSLLWLWK 381
           +DR+Q  E+   P   NC   WL K
Sbjct: 383 VDRMQHCELHMQPRKKNCCRSWLSK 407


>DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 24.2 bits (50), Expect = 2.9
 Identities = 10/25 (40%), Positives = 13/25 (52%)

Query: 357 IDRLQELEISGNPFACNCSLLWLWK 381
           +DR+Q  E+   P   NC   WL K
Sbjct: 383 VDRMQHCELHMQPRKKNCCRSWLSK 407


>AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 23.8 bits (49), Expect = 3.9
 Identities = 11/38 (28%), Positives = 15/38 (39%)

Query: 527 SVDKNPYYQEESEEHIYQQFAYETIPPHRTPEKPHIVY 564
           +VD    Y    +  +     Y  I   RT E+PH  Y
Sbjct: 84  AVDPEDMYLAVKDNKLASNAGYNVIEQVRTKEEPHAPY 121


>AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 23.8 bits (49), Expect = 3.9
 Identities = 11/38 (28%), Positives = 15/38 (39%)

Query: 527 SVDKNPYYQEESEEHIYQQFAYETIPPHRTPEKPHIVY 564
           +VD    Y    +  +     Y  I   RT E+PH  Y
Sbjct: 84  AVDPEDMYLAVKDNKLASNAGYNVIEQVRTKEEPHAPY 121


>AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 23.8 bits (49), Expect = 3.9
 Identities = 11/38 (28%), Positives = 15/38 (39%)

Query: 527 SVDKNPYYQEESEEHIYQQFAYETIPPHRTPEKPHIVY 564
           +VD    Y    +  +     Y  I   RT E+PH  Y
Sbjct: 84  AVDPEDMYLAVKDNKLASNAGYNVIEQVRTKEEPHAPY 121


>DQ435324-1|ABD92639.1|  152|Apis mellifera OBP3 protein.
          Length = 152

 Score = 23.0 bits (47), Expect = 6.7
 Identities = 19/66 (28%), Positives = 25/66 (37%), Gaps = 3/66 (4%)

Query: 15 TLCPVRCM---CDDALRAASCANANLEIVPIQLNPEATLMNLTHNAIDNLLYAFNLYTQL 71
          TLC V  M   CDD        N NL+ +   L  E+  M      I+  L+        
Sbjct: 10 TLCIVSYMMVRCDDITLCLKQENLNLDDIDSLLEDESERMLRKRGCIEACLFHRLALMND 69

Query: 72 TVLDIS 77
           V D+S
Sbjct: 70 NVFDVS 75


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 156,893
Number of Sequences: 429
Number of extensions: 6543
Number of successful extensions: 54
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 22
Number of HSP's gapped (non-prelim): 16
length of query: 565
length of database: 140,377
effective HSP length: 61
effective length of query: 504
effective length of database: 114,208
effective search space: 57560832
effective search space used: 57560832
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 46 (22.6 bits)