GeneModel BLAST Result against rice

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002630-TA|BGIBMGA002630-PA|IPR006625|Insect
pheromone/odorant binding protein PhBP, IPR006170|Pheromone/general
odorant binding protein, PBP/GOBP
         (143 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_06_0236 - 21781508-21783043,21783307-21783504                       28   3.4  
04_01_0275 + 3648866-3649951                                           27   4.4  
01_06_0193 - 27359575-27361962                                         27   7.7  

>09_06_0236 - 21781508-21783043,21783307-21783504
          Length = 577

 Score = 27.9 bits (59), Expect = 3.4
 Identities = 8/15 (53%), Positives = 15/15 (100%)

Query: 80  DIGVVNPDGHIKVKE 94
           D+GVV+PDG++++K+
Sbjct: 428 DVGVVHPDGYVEIKD 442


>04_01_0275 + 3648866-3649951
          Length = 361

 Score = 27.5 bits (58), Expect = 4.4
 Identities = 22/82 (26%), Positives = 40/82 (48%), Gaps = 10/82 (12%)

Query: 63  KVSEDEKFKEFFYCACNDIGVVNPDGHIKVKECIELFPKETQPLVEPVIKNCDK------ 116
           K++ +E++ E+ Y     I V +PD    + +CI  + K   P+V+P ++  +K      
Sbjct: 31  KLASEEEWMEYEYHYSRGIRV-SPDIRKVLFDCIWEYMKLAYPVVQPKMETDEKRKKPCS 89

Query: 117 ---EGVNKYDTLFKYLKCFQET 135
              E V + D    +L  FQE+
Sbjct: 90  AHVESVRELDEALAFLPEFQES 111


>01_06_0193 - 27359575-27361962
          Length = 795

 Score = 26.6 bits (56), Expect = 7.7
 Identities = 13/75 (17%), Positives = 35/75 (46%)

Query: 1   MLKVFVVVVCTLGASQLCAALYTQKVAVSFPKDKTTIVVEAMKSCIAKTGANPNVIEVIS 60
           +++   VV   L + ++   +   ++   F  D+   +V+A  SC+ +    P + +++ 
Sbjct: 721 LMQFVQVVKQMLTSGEVLDTIVDSRLKGHFNCDQAKAMVKAAISCLEERSKRPTMDQIVK 780

Query: 61  SGKVSEDEKFKEFFY 75
              V +DE +   ++
Sbjct: 781 DLMVYDDEDYHPAYF 795


  Database: rice
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.320    0.136    0.402 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,975,457
Number of Sequences: 37544
Number of extensions: 152922
Number of successful extensions: 295
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 293
Number of HSP's gapped (non-prelim): 3
length of query: 143
length of database: 14,793,348
effective HSP length: 75
effective length of query: 68
effective length of database: 11,977,548
effective search space: 814473264
effective search space used: 814473264
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 56 (26.6 bits)