GeneModel BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002629-TA|BGIBMGA002629-PA|IPR006625|Insect
pheromone/odorant binding protein PhBP, IPR006170|Pheromone/general
odorant binding protein, PBP/GOBP
         (142 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC2G11.05c |||BRO1 domain protein|Schizosaccharomyces pombe|ch...    30   0.16 
SPBC530.06c |||translation initiation factor eIF3 alpha subunit ...    25   4.5  
SPAC2F7.04 |pmc2|med1|RNA polymerase II holoenzyme mediator comp...    25   4.5  
SPAC17A2.03c |vma6||V-type ATPase subunit d|Schizosaccharomyces ...    25   4.5  
SPAC144.09c |sfc2||RNA polymerase III transcription factor TFIII...    25   5.9  
SPAC222.14c |||GTP binding protein Sey1 |Schizosaccharomyces pom...    24   7.8  
SPAC6F12.09 |rdp1|rdr1|RNA-directed RNA polymerase Rdp1|Schizosa...    24   7.8  
SPAC19A8.15 |trp2||tryptophan synthase|Schizosaccharomyces pombe...    24   7.8  

>SPAC2G11.05c |||BRO1 domain protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 701

 Score = 29.9 bits (64), Expect = 0.16
 Identities = 14/40 (35%), Positives = 21/40 (52%)

Query: 26  KLVSFAPEVAKKLKVLIQECLNENGLGEDAIEVIRAGEYR 65
           K++SF+ E  KK K L+Q   NE  +  +   +I   E R
Sbjct: 621 KILSFSQETEKKYKFLLQTVRNETEIARELYNIICRAEER 660


>SPBC530.06c |||translation initiation factor eIF3 alpha subunit
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1173

 Score = 25.0 bits (52), Expect = 4.5
 Identities = 10/39 (25%), Positives = 23/39 (58%)

Query: 23  DSRKLVSFAPEVAKKLKVLIQECLNENGLGEDAIEVIRA 61
           +S ++  F P+    L  +I+ C+  +GL ++++E  +A
Sbjct: 913 ESEQINIFRPKDILNLMPVIKTCIPYSGLAQESLEACKA 951


>SPAC2F7.04 |pmc2|med1|RNA polymerase II holoenzyme mediator complex
           subunit |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 454

 Score = 25.0 bits (52), Expect = 4.5
 Identities = 12/38 (31%), Positives = 18/38 (47%)

Query: 100 PKDIDVVTVIESCGKEDGNTPVEQVFKYFKCFQKNSPV 137
           PKDI+VV    +   E  N PV +       +  N+P+
Sbjct: 87  PKDINVVLAFANASGEQYNNPVAEKLLKDAIYNCNTPL 124


>SPAC17A2.03c |vma6||V-type ATPase subunit d|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 343

 Score = 25.0 bits (52), Expect = 4.5
 Identities = 24/75 (32%), Positives = 36/75 (48%), Gaps = 10/75 (13%)

Query: 43  QECLNENGLGEDAIEVIRAGEYRED-EPFQNLVYCAYKKFGALDENNRIISQVAAASFPK 101
           ++CL+ + L E  IE+IR   Y+   E F N  +C  KK GA   +    + +    F  
Sbjct: 161 KDCLSADDLDEQHIEIIRNTLYKAYLEDFYN--FC--KKIGACTAD----TMLPILEFEA 212

Query: 102 DIDVVTV-IESCGKE 115
           D   +T+ I S G E
Sbjct: 213 DRRAITITINSFGTE 227


>SPAC144.09c |sfc2||RNA polymerase III transcription factor
           TFIIIA|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 374

 Score = 24.6 bits (51), Expect = 5.9
 Identities = 13/35 (37%), Positives = 18/35 (51%)

Query: 46  LNENGLGEDAIEVIRAGEYREDEPFQNLVYCAYKK 80
           +NE G+  D IE +   + +E E   NLV    KK
Sbjct: 299 INECGIKHDGIEGVAIHDQKEKELSSNLVSDVAKK 333


>SPAC222.14c |||GTP binding protein Sey1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 762

 Score = 24.2 bits (50), Expect = 7.8
 Identities = 14/43 (32%), Positives = 21/43 (48%), Gaps = 7/43 (16%)

Query: 78  YKKFGALDENNRIISQVAAASFPKDIDVVTVIESCGKEDGNTP 120
           +KK G +D + R        S  K +D++ V+ S    DGN P
Sbjct: 566 WKKSGTIDRDYR-------ESLTKTLDLINVLASIKVSDGNYP 601


>SPAC6F12.09 |rdp1|rdr1|RNA-directed RNA polymerase
           Rdp1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1215

 Score = 24.2 bits (50), Expect = 7.8
 Identities = 10/29 (34%), Positives = 19/29 (65%)

Query: 33  EVAKKLKVLIQECLNENGLGEDAIEVIRA 61
           E+ +++  L+Q CL++N L E  + +I A
Sbjct: 377 EIEEEIAYLLQACLSKNLLSEIDLPIILA 405


>SPAC19A8.15 |trp2||tryptophan synthase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 697

 Score = 24.2 bits (50), Expect = 7.8
 Identities = 11/29 (37%), Positives = 15/29 (51%)

Query: 96  AASFPKDIDVVTVIESCGKEDGNTPVEQV 124
           A   PKD D+V  I   G +D  +  EQ+
Sbjct: 656 AKKLPKDKDIVITISGRGDKDVQSVAEQL 684


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.317    0.135    0.383 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 587,184
Number of Sequences: 5004
Number of extensions: 23483
Number of successful extensions: 61
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 55
Number of HSP's gapped (non-prelim): 8
length of query: 142
length of database: 2,362,478
effective HSP length: 66
effective length of query: 76
effective length of database: 2,032,214
effective search space: 154448264
effective search space used: 154448264
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 50 (24.2 bits)