GeneModel BLAST Result against rice

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002629-TA|BGIBMGA002629-PA|IPR006625|Insect
pheromone/odorant binding protein PhBP, IPR006170|Pheromone/general
odorant binding protein, PBP/GOBP
         (142 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_01_0172 + 1362101-1363708                                           31   0.35 
09_04_0165 + 15274448-15277336                                         29   1.4  
12_02_0877 - 23946449-23948284                                         27   5.8  
06_01_0078 - 628946-629524,629620-629684,629814-629935,630042-63...    27   5.8  
01_06_0937 + 33175966-33178020                                         27   5.8  
03_05_0725 + 27155736-27155746,27155798-27155949,27156108-271580...    27   7.6  
03_02_0768 + 11015855-11016063,11016285-11016359,11018296-110188...    27   7.6  

>06_01_0172 + 1362101-1363708
          Length = 535

 Score = 31.1 bits (67), Expect = 0.35
 Identities = 26/98 (26%), Positives = 45/98 (45%), Gaps = 6/98 (6%)

Query: 28  VSFAPEVAKKLKVLIQECLNENGLGEDAI--EVIRAGEYREDEPFQNLVYCAYKKFGALD 85
           +   P+V     VL   C   +  G   +  ++I +G  R D     ++   Y + G L 
Sbjct: 222 LGITPDVVTYTTVLSAYCGKGDIEGAQKLFDDIIASGR-RPDVTMYTVLIDGYCQCGNLQ 280

Query: 86  ENNRIISQVAAASF-PKDIDVVTVIESCGKEDGNTPVE 122
           +  RI+ ++ AA   P ++    VIE+C KE+   P+E
Sbjct: 281 DAARIMDEMEAARVQPNEVTYSVVIEACCKEE--KPIE 316


>09_04_0165 + 15274448-15277336
          Length = 962

 Score = 29.1 bits (62), Expect = 1.4
 Identities = 15/50 (30%), Positives = 30/50 (60%), Gaps = 3/50 (6%)

Query: 48  ENGLGEDAIEVIRAGEYREDEPFQNLVY---CAYKKFGALDENNRIISQV 94
           +N L E+A+ V+R  ++++ +   NL +   C+ K+ G  D+  RI +Q+
Sbjct: 553 QNSLVEEAMRVLREKKWKDSDFEDNLYHILICSCKEAGCCDDAVRIYNQM 602


>12_02_0877 - 23946449-23948284
          Length = 611

 Score = 27.1 bits (57), Expect = 5.8
 Identities = 14/55 (25%), Positives = 31/55 (56%), Gaps = 3/55 (5%)

Query: 76  CAYKKFGALDENNRIISQVAAASFPKDI-DVVTVIESCGKEDGNTPVEQVFKYFK 129
           CA K  G +DE  ++ +Q+  AS   D+  VV+++ +C +    +  +++ +Y +
Sbjct: 294 CAQK--GLVDEAGKLFAQMKEASVELDVAAVVSILAACAESGSLSLGKRIHRYVR 346


>06_01_0078 -
           628946-629524,629620-629684,629814-629935,630042-630129,
           630508-630819,630908-632189,632296-632784
          Length = 978

 Score = 27.1 bits (57), Expect = 5.8
 Identities = 14/51 (27%), Positives = 25/51 (49%)

Query: 53  EDAIEVIRAGEYREDEPFQNLVYCAYKKFGALDENNRIISQVAAASFPKDI 103
           E+AI+++            N +  A+ K G +DE  R+ +Q+  A  P D+
Sbjct: 841 EEAIQMMLRSNMTPSCTHFNHLISAFLKEGQIDEAQRMYNQMEEAGIPADL 891


>01_06_0937 + 33175966-33178020
          Length = 684

 Score = 27.1 bits (57), Expect = 5.8
 Identities = 21/70 (30%), Positives = 31/70 (44%), Gaps = 5/70 (7%)

Query: 31  APEVAKKLKVLIQECLNENGLGEDAIEVIRAGEYRE---DEPFQNLVYCAYKKFGALDEN 87
           AP+V    K++   C    G   DA  V+RA E      D    N +   Y ++G LD  
Sbjct: 75  APDVYLCTKLIRNLC--RRGRTSDAARVLRAAERSGTAVDVFAYNTLVAGYCRYGQLDAA 132

Query: 88  NRIISQVAAA 97
            R+I+ +  A
Sbjct: 133 RRLIASMPVA 142


>03_05_0725 +
           27155736-27155746,27155798-27155949,27156108-27158068,
           27159169-27159397,27159506-27159634,27159725-27159838,
           27160059-27160258,27160301-27160599,27160713-27160923,
           27161017-27161172,27161290-27161447,27161532-27161724,
           27162015-27162406,27162537-27162717,27162802-27163031,
           27163108-27163753,27163833-27163902,27163994-27164244
          Length = 1860

 Score = 26.6 bits (56), Expect = 7.6
 Identities = 14/31 (45%), Positives = 18/31 (58%)

Query: 38  LKVLIQECLNENGLGEDAIEVIRAGEYREDE 68
           L V ++  LN NG+ EDA E  RA +   DE
Sbjct: 819 LDVKLKSQLNPNGMEEDAAENDRAEDVTTDE 849


>03_02_0768 +
           11015855-11016063,11016285-11016359,11018296-11018833,
           11019356-11020465
          Length = 643

 Score = 26.6 bits (56), Expect = 7.6
 Identities = 16/63 (25%), Positives = 34/63 (53%), Gaps = 3/63 (4%)

Query: 71  QNLVYCAYKKFGALDENNRIISQVAAASFPK-DIDVVTVIESCGKEDGNTPVEQVFKYFK 129
           QN+V   Y + G LD+  +++S +  ++  K D+  + +I S     G   +E + K+++
Sbjct: 398 QNIVLSGYGRAGRLDDMEKVLSAMLDSTTSKPDVWTMNIILSLFGNRGQ--IESMEKWYE 455

Query: 130 CFQ 132
            F+
Sbjct: 456 KFR 458


  Database: rice
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.317    0.135    0.383 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,524,257
Number of Sequences: 37544
Number of extensions: 136629
Number of successful extensions: 341
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 339
Number of HSP's gapped (non-prelim): 7
length of query: 142
length of database: 14,793,348
effective HSP length: 75
effective length of query: 67
effective length of database: 11,977,548
effective search space: 802495716
effective search space used: 802495716
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 56 (26.6 bits)