Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA002628-TA|BGIBMGA002628-PA|undefined
(74 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_01_0099 - 751627-752126,752866-753056,753188-753945 30 0.20
04_04_1270 - 32278793-32279095,32279177-32279327,32279427-322796... 29 0.34
06_03_0403 - 20435349-20435358,20435750-20436204,20436744-20438315 29 0.60
01_05_0309 - 20713774-20713818,20713838-20713915,20714044-207142... 28 0.80
03_02_0036 + 5182345-5183511 27 2.4
02_05_1221 - 35023734-35023868,35024002-35024217,35024349-350246... 26 3.2
01_06_0693 - 31280108-31281271 26 3.2
11_04_0094 + 13418604-13418680,13419331-13419400,13420078-134202... 26 4.2
06_01_0117 + 912780-912959,913754-913828,914059-914112,914848-91... 25 7.4
01_07_0126 - 41222916-41222942,41223120-41223190,41223478-412235... 25 7.4
01_01_0473 - 3478660-3480338,3480507-3480609 25 7.4
07_03_0276 + 16166528-16166796,16166824-16167291,16168048-161684... 25 9.8
06_01_0520 + 3761990-3762327,3763304-3763589,3763746-3763820,376... 25 9.8
>01_01_0099 - 751627-752126,752866-753056,753188-753945
Length = 482
Score = 30.3 bits (65), Expect = 0.20
Identities = 13/37 (35%), Positives = 21/37 (56%), Gaps = 2/37 (5%)
Query: 12 YSRYAMADGDANFRNMMEELFPDYPQIITSLLDCYRE 48
Y RY + + + RN+++EL P Y I + + C RE
Sbjct: 128 YRRYGVVEDSS--RNIVQELMPSYSTITAAFVTCSRE 162
>04_04_1270 -
32278793-32279095,32279177-32279327,32279427-32279664,
32279778-32279988,32280067-32280248,32280332-32280448,
32280828-32282094
Length = 822
Score = 29.5 bits (63), Expect = 0.34
Identities = 11/27 (40%), Positives = 19/27 (70%)
Query: 3 SMVHTDNKIYSRYAMADGDANFRNMME 29
++V+T ++ Y RY +DG AN R M++
Sbjct: 232 TLVNTQDEFYVRYTTSDGSANARIMLD 258
>06_03_0403 -
20435349-20435358,20435750-20436204,20436744-20438315
Length = 678
Score = 28.7 bits (61), Expect = 0.60
Identities = 14/47 (29%), Positives = 29/47 (61%), Gaps = 1/47 (2%)
Query: 28 MEELFPDYPQIIT-SLLDCYRESLHSVATTNTFAKCIQEKTQVKLLI 73
M LF + ++T S L C+ S+ S+A+++ F +C+ +K +L++
Sbjct: 1 MATLFRNLSLVLTISFLSCHYLSVTSLASSDGFVRCLLQKIPGELVL 47
>01_05_0309 - 20713774-20713818,20713838-20713915,20714044-20714222,
20714296-20714556,20715222-20715393,20715501-20715662,
20716435-20716863,20717729-20717785,20717872-20718842,
20719098-20719182,20719269-20719637,20719756-20720001,
20720090-20720362,20720663-20720827,20721328-20721556,
20721727-20722168,20723152-20724138,20724352-20724517,
20725070-20725728,20725820-20726186
Length = 2113
Score = 28.3 bits (60), Expect = 0.80
Identities = 16/49 (32%), Positives = 27/49 (55%), Gaps = 4/49 (8%)
Query: 16 AMADGDANFRNMMEELFPDYPQIITSLLDCYRESLHSVAT----TNTFA 60
A+ GD +++E + +Y Q + LLDC+ +SL ++ TN FA
Sbjct: 1083 AVDKGDHWLSSLLEWMLGNYSQSVNQLLDCHLKSLIEESSIPGDTNVFA 1131
>03_02_0036 + 5182345-5183511
Length = 388
Score = 26.6 bits (56), Expect = 2.4
Identities = 10/39 (25%), Positives = 20/39 (51%)
Query: 36 PQIITSLLDCYRESLHSVATTNTFAKCIQEKTQVKLLIH 74
P++ + D + SLH++ KC++ +LL+H
Sbjct: 106 PELFDLVEDYFESSLHTLDFCTALDKCLKRARDSQLLLH 144
>02_05_1221 -
35023734-35023868,35024002-35024217,35024349-35024675,
35024845-35025218,35025560-35025647,35025767-35025910,
35026053-35026178,35026264-35026412,35026539-35026644,
35026757-35026900,35027018-35027194,35027304-35027453,
35027570-35027788
Length = 784
Score = 26.2 bits (55), Expect = 3.2
Identities = 15/47 (31%), Positives = 25/47 (53%), Gaps = 4/47 (8%)
Query: 19 DGDANFRNMMEELFPDYPQIITSLLDCYRESLHSVATTNTFAKCIQE 65
DGD N +++EL P P I + +L + S ++ FA+ I+E
Sbjct: 739 DGDVNVVYLVQELLPVLPSISSKIL----PEVMSRLSSRVFARLIRE 781
>01_06_0693 - 31280108-31281271
Length = 387
Score = 26.2 bits (55), Expect = 3.2
Identities = 17/51 (33%), Positives = 25/51 (49%), Gaps = 1/51 (1%)
Query: 1 MLSMVHTDNKIYSRYAMADGDANFRNMMEELFPDYPQIITSLLDCYRESLH 51
+LS D ++ Y M A FR M+EE P + + L+ Y +SLH
Sbjct: 184 LLSRGGGDTMVHYMY-MDTVSALFRQMLEEGVPPDTRALNVLVKGYAQSLH 233
>11_04_0094 +
13418604-13418680,13419331-13419400,13420078-13420236,
13420334-13420445,13420530-13420649,13422249-13422406,
13422987-13423217,13424621-13424713,13425088-13425227,
13426331-13426401,13427554-13427637,13427752-13427846
Length = 469
Score = 25.8 bits (54), Expect = 4.2
Identities = 10/29 (34%), Positives = 17/29 (58%)
Query: 43 LDCYRESLHSVATTNTFAKCIQEKTQVKL 71
L C H +++ ++ C+Q KTQVK+
Sbjct: 24 LQCVLVKFHHGSSSQFYSWCLQTKTQVKV 52
>06_01_0117 +
912780-912959,913754-913828,914059-914112,914848-914913,
915137-915241,915454-915570,915827-915927,916012-916058,
916664-916735,916828-916983,917139-917368,917472-917511,
917603-917736,917830-917931,918726-918770,919129-919206,
919225-919365,919447-919542,919732-919833,920185-920283
Length = 679
Score = 25.0 bits (52), Expect = 7.4
Identities = 10/20 (50%), Positives = 13/20 (65%)
Query: 18 ADGDANFRNMMEELFPDYPQ 37
ADGD +FRN +L P P+
Sbjct: 562 ADGDDDFRNSRLKLIPSVPK 581
>01_07_0126 -
41222916-41222942,41223120-41223190,41223478-41223560,
41223587-41223653,41223740-41223848,41224431-41224511,
41224671-41224940,41225035-41226510,41226832-41226908,
41227812-41227912,41229397-41229660,41230964-41231136
Length = 932
Score = 25.0 bits (52), Expect = 7.4
Identities = 11/33 (33%), Positives = 19/33 (57%)
Query: 17 MADGDANFRNMMEELFPDYPQIITSLLDCYRES 49
+A+ A RNM+E + P + + L+C RE+
Sbjct: 717 VAEKFARTRNMLEAIATGIPVVTPAWLECCREA 749
>01_01_0473 - 3478660-3480338,3480507-3480609
Length = 593
Score = 25.0 bits (52), Expect = 7.4
Identities = 16/60 (26%), Positives = 29/60 (48%), Gaps = 4/60 (6%)
Query: 19 DGDANFRNMMEELFPDYPQIITSLLDCYRESLHSVATTNT----FAKCIQEKTQVKLLIH 74
D D+N + M+EE ++ Q+ L E AT N + ++EK+Q++ I+
Sbjct: 336 DNDSNEKKMLEERAIEFEQVRKELEGSRTEVAELQATINNLKADLGRALEEKSQLESRIN 395
>07_03_0276 +
16166528-16166796,16166824-16167291,16168048-16168414,
16168565-16168587,16170094-16170385
Length = 472
Score = 24.6 bits (51), Expect = 9.8
Identities = 13/28 (46%), Positives = 17/28 (60%), Gaps = 2/28 (7%)
Query: 5 VHTDNKIYSRYAMADGDANF--RNMMEE 30
V TD K++S Y M + D+ F R M EE
Sbjct: 255 VQTDPKMWSGYPMEEQDSKFYTRAMFEE 282
>06_01_0520 + 3761990-3762327,3763304-3763589,3763746-3763820,
3764013-3764961,3766967-3767064,3768144-3768284,
3768758-3768874,3768924-3769013,3769014-3771818
Length = 1632
Score = 24.6 bits (51), Expect = 9.8
Identities = 13/56 (23%), Positives = 24/56 (42%)
Query: 18 ADGDANFRNMMEELFPDYPQIITSLLDCYRESLHSVATTNTFAKCIQEKTQVKLLI 73
++ A R+M + + Q++T+ + S T N FAKC + L+
Sbjct: 1407 SNNSAACRSMGSDYMEEVHQLVTNCSEISAAIPESSGTLNNFAKCCGDSANKNSLL 1462
Database: rice
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.323 0.133 0.387
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,991,831
Number of Sequences: 37544
Number of extensions: 61361
Number of successful extensions: 183
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 172
Number of HSP's gapped (non-prelim): 13
length of query: 74
length of database: 14,793,348
effective HSP length: 54
effective length of query: 20
effective length of database: 12,765,972
effective search space: 255319440
effective search space used: 255319440
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.5 bits)
S2: 51 (24.6 bits)
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