GeneModel BLAST Result against celegans

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002628-TA|BGIBMGA002628-PA|undefined
         (74 letters)

Database: celegans 
           27,539 sequences; 12,573,161 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF067623-5|AAC17555.3| 1043|Caenorhabditis elegans Guanylyl cycl...    27   2.1  
AB201390-1|BAE78830.1| 1073|Caenorhabditis elegans recepotor typ...    27   2.1  
Z78420-2|CAB01710.3|  738|Caenorhabditis elegans Hypothetical pr...    26   3.7  

>AF067623-5|AAC17555.3| 1043|Caenorhabditis elegans Guanylyl cyclase
           protein 23 protein.
          Length = 1043

 Score = 26.6 bits (56), Expect = 2.1
 Identities = 10/31 (32%), Positives = 17/31 (54%)

Query: 19  DGDANFRNMMEELFPDYPQIITSLLDCYRES 49
           DG   FR  + +    +P ++  LLDC+ E+
Sbjct: 730 DGTKTFRPTVHDRTQIHPDLVALLLDCWNEN 760


>AB201390-1|BAE78830.1| 1073|Caenorhabditis elegans recepotor type
           guanyly cyclase protein.
          Length = 1073

 Score = 26.6 bits (56), Expect = 2.1
 Identities = 10/31 (32%), Positives = 17/31 (54%)

Query: 19  DGDANFRNMMEELFPDYPQIITSLLDCYRES 49
           DG   FR  + +    +P ++  LLDC+ E+
Sbjct: 760 DGTKTFRPTVHDRTQIHPDLVALLLDCWNEN 790


>Z78420-2|CAB01710.3|  738|Caenorhabditis elegans Hypothetical
           protein F45H11.3 protein.
          Length = 738

 Score = 25.8 bits (54), Expect = 3.7
 Identities = 11/31 (35%), Positives = 19/31 (61%)

Query: 4   MVHTDNKIYSRYAMADGDANFRNMMEELFPD 34
           ++H  N+I SRYA  D  +++   ME+L  +
Sbjct: 322 LLHYYNRILSRYAPCDISSDYSPRMEKLLKE 352


  Database: celegans
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 12,573,161
  Number of sequences in database:  27,539
  
Lambda     K      H
   0.323    0.133    0.387 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,833,540
Number of Sequences: 27539
Number of extensions: 60131
Number of successful extensions: 179
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 176
Number of HSP's gapped (non-prelim): 3
length of query: 74
length of database: 12,573,161
effective HSP length: 54
effective length of query: 20
effective length of database: 11,086,055
effective search space: 221721100
effective search space used: 221721100
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.5 bits)
S2: 51 (24.6 bits)