GeneModel BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002627-TA|BGIBMGA002627-PA|IPR006625|Insect
pheromone/odorant binding protein PhBP, IPR006170|Pheromone/general
odorant binding protein, PBP/GOBP
         (137 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC16C4.01 |sif2|SPCC5E4.09|Sad1 interacting factor 2|Schizosac...    28   0.45 
SPAC3H5.06c |pol1|swi7, polA|DNA polymerase alpha catalytic subu...    25   4.2  
SPAC869.09 |||conserved fungal protein|Schizosaccharomyces pombe...    25   5.5  
SPBC13A2.03 |||phosphatidate cytidylyltransferase|Schizosaccharo...    24   9.7  

>SPCC16C4.01 |sif2|SPCC5E4.09|Sad1 interacting factor
           2|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 446

 Score = 28.3 bits (60), Expect = 0.45
 Identities = 25/112 (22%), Positives = 42/112 (37%)

Query: 19  DNVHLNEDEREKANWYTAECGVETGVSTEVINAAKIGKYSKDKAFKKFVLCFFKKSAILN 78
           D  HL +  RE     TA C  +T     +    +  + S     K+F  C +   +  N
Sbjct: 53  DAEHLGKRHREFLPRVTAYCTCDTFRVDLLFKFFQSRRSSHKTRPKQFDECIYSPYSYNN 112

Query: 79  SDGTLNMVVALAKLPSGVNKSEAQSVLEQCKNKTGQDAADKAFAILQCFHKG 130
            + T  +   L      +N+  +Q  L+    ++G D     F  + CF  G
Sbjct: 113 EETTDLLPDTLESSRGTLNRESSQESLQSIFEESGLDRNQPLFREVFCFTYG 164


>SPAC3H5.06c |pol1|swi7, polA|DNA polymerase alpha catalytic subunit
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1405

 Score = 25.0 bits (52), Expect = 4.2
 Identities = 10/20 (50%), Positives = 13/20 (65%)

Query: 60  DKAFKKFVLCFFKKSAILNS 79
           DKA K++V CF K   I+ S
Sbjct: 352 DKATKQYVSCFLKVDGIMRS 371


>SPAC869.09 |||conserved fungal protein|Schizosaccharomyces
          pombe|chr 1|||Manual
          Length = 116

 Score = 24.6 bits (51), Expect = 5.5
 Identities = 11/34 (32%), Positives = 18/34 (52%)

Query: 20 NVHLNEDEREKANWYTAECGVETGVSTEVINAAK 53
          N H++E+ +E+A  Y  E G E+  +T      K
Sbjct: 17 NPHVSEEAKERARKYLKEHGSESHYTTGTTRGQK 50


>SPBC13A2.03 |||phosphatidate
           cytidylyltransferase|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 439

 Score = 23.8 bits (49), Expect = 9.7
 Identities = 12/42 (28%), Positives = 21/42 (50%)

Query: 40  VETGVSTEVINAAKIGKYSKDKAFKKFVLCFFKKSAILNSDG 81
           V+ GV  EVI  A +    KD  + +F+  +F  + +  + G
Sbjct: 84  VQIGVYKEVIAIASVPSREKDLPWTRFINWYFLMTTLYYAYG 125


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.319    0.131    0.386 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 567,961
Number of Sequences: 5004
Number of extensions: 19697
Number of successful extensions: 66
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 62
Number of HSP's gapped (non-prelim): 4
length of query: 137
length of database: 2,362,478
effective HSP length: 66
effective length of query: 71
effective length of database: 2,032,214
effective search space: 144287194
effective search space used: 144287194
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 49 (23.8 bits)