GeneModel BLAST Result against tribolium

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002626-TA|BGIBMGA002626-PA|IPR006625|Insect
pheromone/odorant binding protein PhBP, IPR006170|Pheromone/general
odorant binding protein, PBP/GOBP
         (137 letters)

Database: tribolium 
           317 sequences; 114,650 total letters

Searching....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY295880-2|AAQ62694.1| 1558|Tribolium castaneum chitin synthase ...    21   3.0  
AY295880-1|AAQ62693.1| 1558|Tribolium castaneum chitin synthase ...    21   3.0  
AY291476-1|AAQ55060.1| 1558|Tribolium castaneum chitin synthase ...    21   3.0  
AY291475-1|AAQ55059.1| 1558|Tribolium castaneum chitin synthase ...    21   3.0  
AY362544-1|AAQ63456.1|  268|Tribolium castaneum chitin synthase ...    20   9.2  
AY362543-1|AAQ63455.1|  677|Tribolium castaneum chitin synthase ...    20   9.2  
AY295879-1|AAQ62692.1| 1464|Tribolium castaneum chitin synthase ...    20   9.2  
AY291477-1|AAQ55061.1| 1464|Tribolium castaneum chitin synthase ...    20   9.2  

>AY295880-2|AAQ62694.1| 1558|Tribolium castaneum chitin synthase
           variant 2 protein.
          Length = 1558

 Score = 21.4 bits (43), Expect = 3.0
 Identities = 10/36 (27%), Positives = 18/36 (50%)

Query: 102 QSVLEQCKDKTGQDAADKAFEIFQCYYKGTKTHILF 137
           +S+L   +D++ +  A K   +    Y   +THI F
Sbjct: 582 KSILRLDEDQSARRVAQKYLRVVDPDYYEFETHIFF 617


>AY295880-1|AAQ62693.1| 1558|Tribolium castaneum chitin synthase
           variant 1 protein.
          Length = 1558

 Score = 21.4 bits (43), Expect = 3.0
 Identities = 10/36 (27%), Positives = 18/36 (50%)

Query: 102 QSVLEQCKDKTGQDAADKAFEIFQCYYKGTKTHILF 137
           +S+L   +D++ +  A K   +    Y   +THI F
Sbjct: 582 KSILRLDEDQSARRVAQKYLRVVDPDYYEFETHIFF 617


>AY291476-1|AAQ55060.1| 1558|Tribolium castaneum chitin synthase
           CHS1B protein.
          Length = 1558

 Score = 21.4 bits (43), Expect = 3.0
 Identities = 10/36 (27%), Positives = 18/36 (50%)

Query: 102 QSVLEQCKDKTGQDAADKAFEIFQCYYKGTKTHILF 137
           +S+L   +D++ +  A K   +    Y   +THI F
Sbjct: 582 KSILRLDEDQSARRVAQKYLRVVDPDYYEFETHIFF 617


>AY291475-1|AAQ55059.1| 1558|Tribolium castaneum chitin synthase
           CHS1A protein.
          Length = 1558

 Score = 21.4 bits (43), Expect = 3.0
 Identities = 10/36 (27%), Positives = 18/36 (50%)

Query: 102 QSVLEQCKDKTGQDAADKAFEIFQCYYKGTKTHILF 137
           +S+L   +D++ +  A K   +    Y   +THI F
Sbjct: 582 KSILRLDEDQSARRVAQKYLRVVDPDYYEFETHIFF 617


>AY362544-1|AAQ63456.1|  268|Tribolium castaneum chitin synthase
           protein.
          Length = 268

 Score = 19.8 bits (39), Expect = 9.2
 Identities = 7/18 (38%), Positives = 13/18 (72%)

Query: 22  HLTETQKEKAKQYTSECV 39
           HL + +K +AK+  S+C+
Sbjct: 110 HLKDKKKIRAKKRWSQCM 127


>AY362543-1|AAQ63455.1|  677|Tribolium castaneum chitin synthase
           protein.
          Length = 677

 Score = 19.8 bits (39), Expect = 9.2
 Identities = 7/14 (50%), Positives = 8/14 (57%)

Query: 3   SVVLICLAFAVFNC 16
           S   IC AF  F+C
Sbjct: 140 SATYICYAFGKFSC 153



 Score = 19.8 bits (39), Expect = 9.2
 Identities = 7/18 (38%), Positives = 13/18 (72%)

Query: 22  HLTETQKEKAKQYTSECV 39
           HL + +K +AK+  S+C+
Sbjct: 424 HLKDKKKIRAKKRWSQCM 441


>AY295879-1|AAQ62692.1| 1464|Tribolium castaneum chitin synthase
           protein.
          Length = 1464

 Score = 19.8 bits (39), Expect = 9.2
 Identities = 7/14 (50%), Positives = 8/14 (57%)

Query: 3   SVVLICLAFAVFNC 16
           S   IC AF  F+C
Sbjct: 373 SATYICYAFGKFSC 386



 Score = 19.8 bits (39), Expect = 9.2
 Identities = 7/18 (38%), Positives = 13/18 (72%)

Query: 22  HLTETQKEKAKQYTSECV 39
           HL + +K +AK+  S+C+
Sbjct: 657 HLKDKKKIRAKKRWSQCM 674


>AY291477-1|AAQ55061.1| 1464|Tribolium castaneum chitin synthase
           CHS2 protein.
          Length = 1464

 Score = 19.8 bits (39), Expect = 9.2
 Identities = 7/14 (50%), Positives = 8/14 (57%)

Query: 3   SVVLICLAFAVFNC 16
           S   IC AF  F+C
Sbjct: 373 SATYICYAFGKFSC 386



 Score = 19.8 bits (39), Expect = 9.2
 Identities = 7/18 (38%), Positives = 13/18 (72%)

Query: 22  HLTETQKEKAKQYTSECV 39
           HL + +K +AK+  S+C+
Sbjct: 657 HLKDKKKIRAKKRWSQCM 674


  Database: tribolium
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 114,650
  Number of sequences in database:  317
  
Lambda     K      H
   0.317    0.130    0.372 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 29,784
Number of Sequences: 317
Number of extensions: 1056
Number of successful extensions: 11
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of query: 137
length of database: 114,650
effective HSP length: 51
effective length of query: 86
effective length of database: 98,483
effective search space:  8469538
effective search space used:  8469538
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.8 bits)
S2: 39 (19.8 bits)