GeneModel BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002626-TA|BGIBMGA002626-PA|IPR006625|Insect
pheromone/odorant binding protein PhBP, IPR006170|Pheromone/general
odorant binding protein, PBP/GOBP
         (137 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC16C4.01 |sif2|SPCC5E4.09|Sad1 interacting factor 2|Schizosac...    26   1.8  
SPAC8F11.04 |||U3 snoRNP-associated protein Cic1/Utp30 family |S...    26   1.8  
SPAC869.09 |||conserved fungal protein|Schizosaccharomyces pombe...    26   2.4  
SPCC1450.03 |||ribonucleoprotein |Schizosaccharomyces pombe|chr ...    24   7.3  
SPBC17A3.01c |tim50|SPBC8D2.21c|TIM23 translocase complex subuni...    24   7.3  
SPBC146.14c |sec26|SPBC337.01c|coatomer beta subunit |Schizosacc...    24   9.7  
SPBC691.05c ||SPBP22H7.01c|membrane transporter |Schizosaccharom...    24   9.7  

>SPCC16C4.01 |sif2|SPCC5E4.09|Sad1 interacting factor
           2|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 446

 Score = 26.2 bits (55), Expect = 1.8
 Identities = 21/112 (18%), Positives = 45/112 (40%)

Query: 19  DNVHLTETQKEKAKQYTSECVKESGVSTEVINAAKTGQYSEDKAFKKFVLCFFNKSAILN 78
           D  HL +  +E   + T+ C  ++     +    ++ + S     K+F  C ++  +  N
Sbjct: 53  DAEHLGKRHREFLPRVTAYCTCDTFRVDLLFKFFQSRRSSHKTRPKQFDECIYSPYSYNN 112

Query: 79  SDGTLNMDVALAKLPPGVNKSEAQSVLEQCKDKTGQDAADKAFEIFQCYYKG 130
            + T  +   L      +N+  +Q  L+   +++G D     F    C+  G
Sbjct: 113 EETTDLLPDTLESSRGTLNRESSQESLQSIFEESGLDRNQPLFREVFCFTYG 164


>SPAC8F11.04 |||U3 snoRNP-associated protein Cic1/Utp30 family
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 373

 Score = 26.2 bits (55), Expect = 1.8
 Identities = 25/82 (30%), Positives = 35/82 (42%), Gaps = 8/82 (9%)

Query: 21  VHLTETQKEKAKQYTSE----CVKESGVSTEVINAAKTGQYSEDKAFKKFVLCFFNKSAI 76
           V + +  K+  +Q  S+     VKE      V NAAKT    ED   KK         + 
Sbjct: 293 VEVAKESKDSKQQNVSDKKQVTVKEVPKKLSVKNAAKTTNRDEDSKGKKAKASPKVSQSS 352

Query: 77  LNSDGTLNMDVALAKLPPGVNK 98
           L ++GT     A+ K+  G NK
Sbjct: 353 LKANGT----TAIKKVKAGKNK 370


>SPAC869.09 |||conserved fungal protein|Schizosaccharomyces
          pombe|chr 1|||Manual
          Length = 116

 Score = 25.8 bits (54), Expect = 2.4
 Identities = 12/34 (35%), Positives = 18/34 (52%)

Query: 20 NVHLTETQKEKAKQYTSECVKESGVSTEVINAAK 53
          N H++E  KE+A++Y  E   ES  +T      K
Sbjct: 17 NPHVSEEAKERARKYLKEHGSESHYTTGTTRGQK 50


>SPCC1450.03 |||ribonucleoprotein |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 240

 Score = 24.2 bits (50), Expect = 7.3
 Identities = 10/34 (29%), Positives = 17/34 (50%)

Query: 27  QKEKAKQYTSECVKESGVSTEVINAAKTGQYSED 60
           ++E+   Y  E V E+G   EV++ A+      D
Sbjct: 135 EEEEENDYIDEDVDEAGYDIEVVDEAENDDMDND 168


>SPBC17A3.01c |tim50|SPBC8D2.21c|TIM23 translocase complex subunit
          Tim50 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 452

 Score = 24.2 bits (50), Expect = 7.3
 Identities = 11/24 (45%), Positives = 14/24 (58%)

Query: 19 DNVHLTETQKEKAKQYTSECVKES 42
          D   +TE  KE+ K+ TS   KES
Sbjct: 39 DTSKITENAKEEVKRDTSSLAKES 62


>SPBC146.14c |sec26|SPBC337.01c|coatomer beta subunit
          |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 940

 Score = 23.8 bits (49), Expect = 9.7
 Identities = 10/33 (30%), Positives = 18/33 (54%)

Query: 58 SEDKAFKKFVLCFFNKSAILNSDGTLNMDVALA 90
          S +K  KK +  ++      N+DGT+  ++ LA
Sbjct: 63 SRNKELKKLLYYYWEVCPKYNNDGTMKQEMILA 95


>SPBC691.05c ||SPBP22H7.01c|membrane transporter
          |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 668

 Score = 23.8 bits (49), Expect = 9.7
 Identities = 15/61 (24%), Positives = 28/61 (45%)

Query: 23 LTETQKEKAKQYTSECVKESGVSTEVINAAKTGQYSEDKAFKKFVLCFFNKSAILNSDGT 82
          + E  +   KQ TS+ V    +  EV  ++KT Q +     ++  L  F+ +    SD +
Sbjct: 1  MNEKLQSYEKQLTSDIVNNCDLIIEVNASSKTCQETLSSLLRELQLSHFSTAVRPGSDTS 60

Query: 83 L 83
          +
Sbjct: 61 I 61


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.317    0.130    0.372 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 573,743
Number of Sequences: 5004
Number of extensions: 20432
Number of successful extensions: 62
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 57
Number of HSP's gapped (non-prelim): 7
length of query: 137
length of database: 2,362,478
effective HSP length: 66
effective length of query: 71
effective length of database: 2,032,214
effective search space: 144287194
effective search space used: 144287194
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 49 (23.8 bits)