GeneModel BLAST Result against rice

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002625-TA|BGIBMGA002625-PA|IPR007244|Mak10 subunit, NatC
N(alpha)-terminal acetyltransferase
         (709 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_05_1121 + 34262019-34262040,34262144-34262211,34262909-342630...    96   7e-20
09_04_0527 - 18337968-18338077,18338440-18341212                       30   5.5  
03_06_0097 - 31632238-31632525,31633386-31633769                       30   7.3  
01_03_0093 - 12422558-12422607,12422679-12422935,12423565-124239...    29   9.7  

>02_05_1121 +
           34262019-34262040,34262144-34262211,34262909-34263067,
           34263146-34263313,34264125-34264278,34264845-34264924,
           34265567-34265839,34265956-34266099,34266750-34266884,
           34266994-34267092,34267530-34267586,34267673-34267877,
           34268159-34268277,34268779-34268877,34268964-34269203
          Length = 673

 Score = 96.3 bits (229), Expect = 7e-20
 Identities = 80/334 (23%), Positives = 142/334 (42%), Gaps = 20/334 (5%)

Query: 45  AMSAIEMMDPKMDAGMMCNRGTPKPLNFHQAVAADKLKIDN-IEPNELIGIIDATMACIV 103
           AMSA+E+MDPKMD G+  +            +A   L +D  ++    + ++D   +C  
Sbjct: 25  AMSALEIMDPKMDCGIEKSGYYSIDEAIEDGIAPVPLSLDRTLDIQRTLDVMDHLFSCEA 84

Query: 104 SWLEGHSLAQTVFTNLYL-HQPHSINNKILKAFCIAVYKLLDCIRDCINQAQVFEEEDFQ 162
           +W +GH+LAQTVFT +YL     + ++ IL +FC  +      +   ++ A+  EEED  
Sbjct: 85  TWHKGHTLAQTVFTCIYLMRMERTSSHAILNSFCRILRATCYAVVSVVSTARTHEEEDLF 144

Query: 163 PMGYGYYLGSNPQSG-----HTYDASL--EVTESKCISLLRXXXXXXXXXXXXXXXXANI 215
            M +G  L            ++ + ++  ++   K  +L R                   
Sbjct: 145 TMSFGLPLRDEGDEKCLSILNSVEETIARQLRACKAQALSRKKTLEGLESLQDNPDLEED 204

Query: 216 LWTALAARIRFTRMFYQALLLITKRD-------SKSGADCVA----LLNGCSEMMKVIIK 264
              AL  R+RF + FY  +  + K          K  A C+     +LN    +      
Sbjct: 205 YCRALLCRLRFRKHFYHVVTCLRKPHGRGLELAQKHVASCLTELSLMLNSRDFLRSQSNN 264

Query: 265 TSGKGTQPVENSDSPNPMGFEPMINQRLLPPTFPRYTRIKPRIEALQYFDELVSRLRHAW 324
           T  +G +    +    P+GF+  +N RLL P  PR  ++    +A++YF++L+  L    
Sbjct: 265 TQQQGDEICTTASGVRPVGFDASLNSRLLSPAPPRAVKLLSWSDAIRYFEKLLRDLDIIC 324

Query: 325 KITSCTNFHTAVDFFMEFSRQRACILSRSALQLL 358
                      + F ++F +    ++ R+ LQ L
Sbjct: 325 SSPLDPVLENVLHFVVQFQKSVPDLVPRAFLQTL 358


>09_04_0527 - 18337968-18338077,18338440-18341212
          Length = 960

 Score = 30.3 bits (65), Expect = 5.5
 Identities = 19/42 (45%), Positives = 25/42 (59%), Gaps = 2/42 (4%)

Query: 440 RARQRDKLVLLLDEFATLQEEAESVDAITSGSMGTGDCPCFS 481
           RAR  D+L LLLD+F TL    E ++ +   S GT + P FS
Sbjct: 751 RARNEDEL-LLLDDF-TLSNPLEKLELVGQLSEGTLESPFFS 790


>03_06_0097 - 31632238-31632525,31633386-31633769
          Length = 223

 Score = 29.9 bits (64), Expect = 7.3
 Identities = 12/26 (46%), Positives = 18/26 (69%)

Query: 531 RAEGLANETTKRIEGKRAGVRKQKKR 556
           R EGL    T+ +E K+AG++K +KR
Sbjct: 192 RGEGLLTRDTRIVERKKAGLKKARKR 217


>01_03_0093 -
           12422558-12422607,12422679-12422935,12423565-12423932,
           12423939-12424800,12425247-12425464
          Length = 584

 Score = 29.5 bits (63), Expect = 9.7
 Identities = 14/32 (43%), Positives = 18/32 (56%)

Query: 533 EGLANETTKRIEGKRAGVRKQKKRTRPYAREG 564
           E +  +   RIEGKRA V+K  K T P  + G
Sbjct: 43  EAILVQAQARIEGKRATVKKATKTTFPLKKRG 74


  Database: rice
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.324    0.137    0.422 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,519,656
Number of Sequences: 37544
Number of extensions: 763868
Number of successful extensions: 1790
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 1781
Number of HSP's gapped (non-prelim): 7
length of query: 709
length of database: 14,793,348
effective HSP length: 87
effective length of query: 622
effective length of database: 11,527,020
effective search space: 7169806440
effective search space used: 7169806440
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.5 bits)
S2: 63 (29.5 bits)