Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA002625-TA|BGIBMGA002625-PA|IPR007244|Mak10 subunit, NatC
N(alpha)-terminal acetyltransferase
(709 letters)
Database: celegans
27,539 sequences; 12,573,161 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF022982-5|AAB69936.2| 799|Caenorhabditis elegans Hypothetical ... 89 1e-17
U51999-8|AAA96090.2| 465|Caenorhabditis elegans Glutamate recep... 33 0.92
AF318611-1|AAK01099.1| 436|Caenorhabditis elegans ionotropic gl... 33 0.92
Z68009-1|CAA92003.1| 1095|Caenorhabditis elegans Hypothetical pr... 30 4.9
U23516-4|AAG38880.1| 210|Caenorhabditis elegans Hypothetical pr... 30 6.5
Z68012-5|CAA92019.1| 408|Caenorhabditis elegans Hypothetical pr... 29 8.5
>AF022982-5|AAB69936.2| 799|Caenorhabditis elegans Hypothetical
protein T23B12.4 protein.
Length = 799
Score = 89.0 bits (211), Expect = 1e-17
Identities = 98/428 (22%), Positives = 182/428 (42%), Gaps = 43/428 (10%)
Query: 284 FEPMINQRLLPPTFPRYTRIKPRIEALQYFDELVSRLRHAWKITSCTNFHTAVDFFMEFS 343
+EP R++P FPR ++ R EA ++ + R+ H +T T+ +++ F+
Sbjct: 357 YEPKTCIRMIPACFPRKIKVPSRQEAADWWVKCAERIYHLCIVTPKTS--KDLNYLFYFA 414
Query: 344 R---QRACILSRSALQLLYLSPSPXXXXXXXXXVPSGVPRPHHIFIEILRDSIKNFVNPP 400
R Q AC+ +RS LQ+ + V S+ N P
Sbjct: 415 RTFGQNACVFTRSLLQICMFPVDNHLCGDENRSIADAVEY-----------SLSNCFCPQ 463
Query: 401 VLINKPMMPGTPQAREVVETFLTRCVRPFAVLLQVCGHNRARQRDKLVLLLDEFATLQE- 459
+L + A+ + FL + + G N +RQRD+L + +++ +
Sbjct: 464 ILDRVSPVYKDQTAQSLYVLFLNHMSKLAITVYGSFGCNLSRQRDRLEMAIEDLGQIHSY 523
Query: 460 ----EAESVDAITSGSMGTGDCPCFS-----TWVLYHVLRVMIAXXXXXXXXXXXXVHEY 510
E + + + SG M T +S T+V +++L ++ +E+
Sbjct: 524 AGRLEERTDEVLLSGKMVTAKEQNYSYHSVATFVFHNLLAIINHYFELGFRMDLYVPYEF 583
Query: 511 HYIFWYLYEFLYGWLVSALGRAEGL------AN---ET-TKRIEGKRAGVRKQKKRTRPY 560
YI+W++ W+ + L R++ + AN ET K++ +R + ++ KR
Sbjct: 584 PYIYWFIGSVQAHWMRTTLERSQEIQLNVYQANPLRETKNKKLWEERCKLGEELKRRVAA 643
Query: 561 AREGLMCQVMQNMCG-GYYKALVAFKLQGKIRQPQSEFDNEAVRYKHRFAPLSGLSPP-Q 618
+ ++ Q+ +M G + V +G I+ P+ D E +R++ RF P L PP +
Sbjct: 644 HQFSVLNQIAISMISDGVVRLTVVLIRKGIIKMPKGGDDAEKLRFERRFEPFDSLGPPVR 703
Query: 619 VHYHEF-CEMTQPLQYENPV-ILYLGGYKHFQQARSLLETI---TVPDQEVQDLLKVAKT 673
V Y F + YE+ + L K F +AR LE I ++E+ L+ VAK+
Sbjct: 704 VDYERFKSDSGIDQMYEDKIETLIDQAQKSFNEAREHLEKIDNSVEQNREMMQLIHVAKS 763
Query: 674 NFVVLKLL 681
N + ++L
Sbjct: 764 NIIACRVL 771
Score = 57.6 bits (133), Expect = 3e-08
Identities = 41/120 (34%), Positives = 62/120 (51%), Gaps = 9/120 (7%)
Query: 46 MSAIEMMDPKMDAGMMCNRGTPKPLNFHQAVAADKLKIDNIEPNELIGIIDATMACIVSW 105
MSAIE+ +PKMD G+ G+ +A++ L D+ P +L I+D+T+A +V+W
Sbjct: 42 MSAIELGEPKMDVGV----GSKHIKTLKEAISGG-LYADDY-PFQL-AIMDSTLAMVVAW 94
Query: 106 LEGHSLAQTVFTNLYLHQPHSINNKILKAFCIAVYKLLDCIRDCINQAQVFEE--EDFQP 163
LEG +L TV+TN+ L + + + F V + IN EE EDF P
Sbjct: 95 LEGSALGSTVWTNVLLSNVTFVKHPVFHPFASGVNLFIRNAHALINSVGNLEELPEDFNP 154
>U51999-8|AAA96090.2| 465|Caenorhabditis elegans Glutamate receptor
family (ampa)protein 7 protein.
Length = 465
Score = 32.7 bits (71), Expect = 0.92
Identities = 16/53 (30%), Positives = 27/53 (50%), Gaps = 1/53 (1%)
Query: 577 YYKALVAFKLQGKIRQPQSEFDNEAVRYKHRFAPLSGLSPPQVHYHEFCEMTQ 629
Y L AF ++ QP S D+ A +YK +AP+ G S + ++ E+ +
Sbjct: 226 YTANLAAFLTVSRLEQPISSLDDLAKQYKIEYAPIKG-SASETYFRRMAEIEE 277
>AF318611-1|AAK01099.1| 436|Caenorhabditis elegans ionotropic
glutamate receptor GLR-7 protein.
Length = 436
Score = 32.7 bits (71), Expect = 0.92
Identities = 16/53 (30%), Positives = 27/53 (50%), Gaps = 1/53 (1%)
Query: 577 YYKALVAFKLQGKIRQPQSEFDNEAVRYKHRFAPLSGLSPPQVHYHEFCEMTQ 629
Y L AF ++ QP S D+ A +YK +AP+ G S + ++ E+ +
Sbjct: 210 YTANLAAFLTVSRLEQPISSLDDLAKQYKIEYAPIKG-SASETYFRRMAEIEE 261
>Z68009-1|CAA92003.1| 1095|Caenorhabditis elegans Hypothetical
protein R09A8.1 protein.
Length = 1095
Score = 30.3 bits (65), Expect = 4.9
Identities = 14/34 (41%), Positives = 24/34 (70%), Gaps = 3/34 (8%)
Query: 523 GWLVSALGRAEGLANETTKRIEGKRAGVRKQKKR 556
G LV LG++EG+ NETT + +G+ +RK+ ++
Sbjct: 19 GGLVDGLGQSEGIWNETTTKKDGR---IRKKNRQ 49
>U23516-4|AAG38880.1| 210|Caenorhabditis elegans Hypothetical
protein B0416.3 protein.
Length = 210
Score = 29.9 bits (64), Expect = 6.5
Identities = 18/49 (36%), Positives = 26/49 (53%), Gaps = 2/49 (4%)
Query: 215 ILWTALAARIRFTRMFYQALLLITKRDSKSGADCVALLNGCSEMMKVII 263
IL T L + F +MF ALL + D G D V L GCS ++ +++
Sbjct: 128 ILITILLLAVVFPKMFLSALLRLPLEDIPFGTDQVLL--GCSLLLALLL 174
>Z68012-5|CAA92019.1| 408|Caenorhabditis elegans Hypothetical
protein T24D5.5 protein.
Length = 408
Score = 29.5 bits (63), Expect = 8.5
Identities = 12/24 (50%), Positives = 18/24 (75%)
Query: 523 GWLVSALGRAEGLANETTKRIEGK 546
G LV LG++EG+ NETT + +G+
Sbjct: 19 GGLVDGLGQSEGIWNETTTKKDGR 42
Database: celegans
Posted date: Oct 5, 2007 11:13 AM
Number of letters in database: 12,573,161
Number of sequences in database: 27,539
Lambda K H
0.324 0.137 0.422
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,642,238
Number of Sequences: 27539
Number of extensions: 670565
Number of successful extensions: 1719
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 1708
Number of HSP's gapped (non-prelim): 8
length of query: 709
length of database: 12,573,161
effective HSP length: 87
effective length of query: 622
effective length of database: 10,177,268
effective search space: 6330260696
effective search space used: 6330260696
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.5 bits)
S2: 63 (29.5 bits)
- SilkBase 1999-2023 -