GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002625-TA|BGIBMGA002625-PA|IPR007244|Mak10 subunit, NatC
N(alpha)-terminal acetyltransferase
         (709 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             27   0.70 
AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.                25   2.1  
AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.    25   2.8  

>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 26.6 bits (56), Expect = 0.70
 Identities = 17/62 (27%), Positives = 27/62 (43%), Gaps = 9/62 (14%)

Query: 375  PSGVPRPHHIFIEILRDSIK-------NFVNPPVLINKPMMPGTPQAREVV--ETFLTRC 425
            P G+P P+ I +    + +        NF NPP  +  P M G P    ++  + F T  
Sbjct: 1135 PGGIPGPNGIKMPSFMEGMPHLPFTPFNFWNPPPFMPSPFMAGAPNVPTILPEQYFATSR 1194

Query: 426  VR 427
            +R
Sbjct: 1195 IR 1196


>AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.
          Length = 554

 Score = 25.0 bits (52), Expect = 2.1
 Identities = 12/34 (35%), Positives = 14/34 (41%), Gaps = 2/34 (5%)

Query: 606 HRFAPLSGLSPPQVHYHEFCEMTQPLQYENPVIL 639
           H   P  G  PP  H+H   +  Q L Y  P  L
Sbjct: 341 HTMGPTMG--PPHHHHHHQTQSLQHLHYRQPPTL 372


>AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.
          Length = 996

 Score = 24.6 bits (51), Expect = 2.8
 Identities = 16/51 (31%), Positives = 22/51 (43%), Gaps = 2/51 (3%)

Query: 386 IEILRDSIKNFVNPPVLINKPMMPGTPQAREV--VETFLTRCVRPFAVLLQ 434
           I IL   +     P + +N    P TP  REV  +E  +  CV    V+ Q
Sbjct: 179 ISILAIKVYYISCPEISVNFAHFPATPTGREVALIEQTIGTCVANAVVIEQ 229


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.324    0.137    0.422 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 192,090
Number of Sequences: 429
Number of extensions: 7858
Number of successful extensions: 27
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 25
Number of HSP's gapped (non-prelim): 3
length of query: 709
length of database: 140,377
effective HSP length: 63
effective length of query: 646
effective length of database: 113,350
effective search space: 73224100
effective search space used: 73224100
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.5 bits)
S2: 47 (23.0 bits)