Silkworm BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002624-TA|BGIBMGA002624-PA|undefined
         (1052 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF540769-1|ABQ14707.1|  620|Apis mellifera adenosine deaminase p...    29   0.26 
AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate r...    29   0.26 
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    25   3.2  
DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.       24   5.6  
AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.          24   7.4  
AF393494-1|AAL60419.1|  144|Apis mellifera odorant binding prote...    23   9.8  
AF166496-1|AAD51944.1|  144|Apis mellifera pheromone-binding pro...    23   9.8  

>EF540769-1|ABQ14707.1|  620|Apis mellifera adenosine deaminase
           protein.
          Length = 620

 Score = 28.7 bits (61), Expect = 0.26
 Identities = 10/17 (58%), Positives = 14/17 (82%)

Query: 440 SHYEGLTLPKKKNRNPQ 456
           S +EG + PKK+N+NPQ
Sbjct: 17  SEFEGASSPKKRNKNPQ 33


>AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate
           receptor 1 protein.
          Length = 953

 Score = 28.7 bits (61), Expect = 0.26
 Identities = 17/46 (36%), Positives = 19/46 (41%), Gaps = 2/46 (4%)

Query: 892 CCTGYIMDLLNQKACMKVTYHPGDFAFDVAMSMNNRILYENSLSGK 937
           CC GY MDLL  K   K        A        N I+  NS+ GK
Sbjct: 458 CCKGYCMDLL--KELSKTINFTYSLALSPDGQFGNYIIKNNSVGGK 501


>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
           protein.
          Length = 1124

 Score = 25.0 bits (52), Expect = 3.2
 Identities = 21/89 (23%), Positives = 38/89 (42%), Gaps = 2/89 (2%)

Query: 564 VLPIHVQQDDNNEIAGETDDIDTENVAVDSTLVEDSPADQNNPELVEDTPVSISSLSPVS 623
           +L ++ + D   + AG   +  + NVAV +  + +   D    ELV+ T     +   V+
Sbjct: 81  ILAVNAEADITLKNAGTPPEAVSYNVAVPTKSILEKKPDVTTVELVDATDPGEHNGDTVT 140

Query: 624 TVTQ--ATDVEPEQEVVGQVIRFPCSCIS 650
            V    A+   P  + + Q     C+ IS
Sbjct: 141 DVEAGLASRTNPLDDSISQANEGFCAVIS 169


>DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.
          Length = 630

 Score = 24.2 bits (50), Expect = 5.6
 Identities = 15/45 (33%), Positives = 24/45 (53%), Gaps = 4/45 (8%)

Query: 466 DLTEIGENIGDQFGIFGGRKRQ-NKLKP---NKHRDGRDGDEYDE 506
           D+ E G   G   G  G R R  N+ +    NK++DG D ++Y++
Sbjct: 74  DIEETGRGKGRGHGKGGSRGRGGNRGRTGFNNKNKDGDDNNDYED 118


>AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.
          Length = 652

 Score = 23.8 bits (49), Expect = 7.4
 Identities = 20/76 (26%), Positives = 30/76 (39%), Gaps = 1/76 (1%)

Query: 370 KIESDMKYEKVETLTPKTPSSVAFDVTSGEAV-SDDMIQIVQSLDSSSEEISPTKESITA 428
           K E+    +  +T+   +  S    V+S  A  SD+M+ I   L       S        
Sbjct: 332 KFETLHTMDSSDTIDIDSHMSDRASVSSKNAADSDNMMMITPELLGLMPSGSSVHSDSGE 391

Query: 429 DESRGHFYNFGSHYEG 444
           + SRGH     SH+ G
Sbjct: 392 NNSRGHSGQSSSHHHG 407


>AF393494-1|AAL60419.1|  144|Apis mellifera odorant binding protein
           ASP1 protein.
          Length = 144

 Score = 23.4 bits (48), Expect = 9.8
 Identities = 9/24 (37%), Positives = 15/24 (62%), Gaps = 2/24 (8%)

Query: 112 CMPLPGGISKFCGRVYNIARAGEE 135
           C+P  G  S  C ++YN+A+  +E
Sbjct: 114 CLPTSG--SDNCNKIYNLAKCVQE 135


>AF166496-1|AAD51944.1|  144|Apis mellifera pheromone-binding
           protein ASP1 protein.
          Length = 144

 Score = 23.4 bits (48), Expect = 9.8
 Identities = 9/24 (37%), Positives = 15/24 (62%), Gaps = 2/24 (8%)

Query: 112 CMPLPGGISKFCGRVYNIARAGEE 135
           C+P  G  S  C ++YN+A+  +E
Sbjct: 114 CLPTSG--SDNCNKIYNLAKCVQE 135


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.317    0.135    0.402 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 290,190
Number of Sequences: 429
Number of extensions: 12803
Number of successful extensions: 28
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 24
Number of HSP's gapped (non-prelim): 8
length of query: 1052
length of database: 140,377
effective HSP length: 65
effective length of query: 987
effective length of database: 112,492
effective search space: 111029604
effective search space used: 111029604
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 48 (23.4 bits)