Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA002624-TA|BGIBMGA002624-PA|undefined
(1052 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
09_03_0217 + 13532018-13532405,13532706-13533175 37 0.074
01_01_0998 - 7894254-7894515,7895133-7895270,7896049-7896246,789... 34 0.69
11_08_0099 + 28342765-28342872,28343016-28343167,28343461-283437... 32 2.8
09_02_0203 - 5746068-5746307,5746469-5746729,5746833-5748239,574... 32 2.8
08_02_1482 - 27428208-27428514,27428605-27428906,27431176-274322... 32 2.8
06_01_0558 - 3968211-3969475,3970198-3970266,3970374-3970529,397... 31 4.9
01_01_1129 - 8948612-8950117,8951354-8951503 31 4.9
02_01_0246 + 1617326-1617367,1618903-1624419,1625040-1625498,162... 31 6.4
01_07_0078 - 40923115-40924016,40924341-40924416,40924686-40924718 31 6.4
12_02_0669 + 21695391-21697443,21698319-21699030,21699169-21699775 30 8.5
11_03_0191 - 11366831-11367676 30 8.5
03_02_0806 + 11391880-11391916,11392247-11393634 30 8.5
02_01_0776 + 5779673-5779987 30 8.5
01_06_1514 - 37892552-37893074,37893291-37893367,37893471-378935... 30 8.5
>09_03_0217 + 13532018-13532405,13532706-13533175
Length = 285
Score = 37.1 bits (82), Expect = 0.074
Identities = 17/77 (22%), Positives = 40/77 (51%)
Query: 555 PILRSPITIVLPIHVQQDDNNEIAGETDDIDTENVAVDSTLVEDSPADQNNPELVEDTPV 614
P+L +P+ D++NE +G+ DD+ E+ +++ ++S + ++ + ED +
Sbjct: 20 PMLWFHYNYYMPLEESDDEDNEKSGDDDDVSDEDEFSETSDEDESTEETDDDGISEDNKI 79
Query: 615 SISSLSPVSTVTQATDV 631
+S +T +A +V
Sbjct: 80 DVSGDDDDNTTDEAKEV 96
>01_01_0998 -
7894254-7894515,7895133-7895270,7896049-7896246,
7896334-7896786,7896877-7897098,7898100-7898227,
7899325-7899432
Length = 502
Score = 33.9 bits (74), Expect = 0.69
Identities = 16/49 (32%), Positives = 22/49 (44%), Gaps = 1/49 (2%)
Query: 22 KSVKKQNQRKSIQNR-NDEDKPDDDGINKYCKCSEAFCNCCRDFSVPVI 69
K ++ N+RKS+ R D DK + Y AF + C F P I
Sbjct: 254 KGARRNNKRKSLSKRPEDHDKNKSTNLRPYLSLKSAFFSLCTAFKQPTI 302
>11_08_0099 + 28342765-28342872,28343016-28343167,28343461-28343705,
28343790-28343921,28344047-28344973,28345057-28345187
Length = 564
Score = 31.9 bits (69), Expect = 2.8
Identities = 21/63 (33%), Positives = 31/63 (49%), Gaps = 3/63 (4%)
Query: 964 PGRNFHFCLAMTGQWRSVELFNMAFDCLRMGANGLAMVKPDENGGIPIPDPHGGVDAVID 1023
PG +F + +TGQ R L++ + LR +G ++ P P P PH +AVI
Sbjct: 111 PGSSFLYNFTITGQ-RGTLLWHAHINWLRATVHGAIVILPKLGVPYPFPAPH--KEAVIV 167
Query: 1024 AGE 1026
GE
Sbjct: 168 LGE 170
>09_02_0203 -
5746068-5746307,5746469-5746729,5746833-5748239,
5748588-5748714,5748800-5749119,5749202-5749963,
5750749-5750898,5751007-5751096,5751196-5751340,
5751440-5751617,5751753-5752448,5752555-5752753
Length = 1524
Score = 31.9 bits (69), Expect = 2.8
Identities = 38/148 (25%), Positives = 67/148 (45%), Gaps = 13/148 (8%)
Query: 462 LDVLDLTEIGENIGDQFGIFGGRKRQNKLKPNKHRDGRDGDEYDEMFDVISLDALTRKSD 521
+D +DL + NI D I N++ P D + D+ D+M ++ S+ + S
Sbjct: 184 VDDIDLKQ--SNILDGEEITSLPMADNEMTP---LDDQIMDQIDDMKEISSIVYNSTISA 238
Query: 522 TGDIEFDKDKEKDYNEIKFKIPKIVWKQAFDPTPILRSPITIVLPIHVQQDDNNEIAGET 581
+ + EK NE + +V +FD P + P P V +DD+ +I
Sbjct: 239 EQHVNSGSEFEKG-NESSDNLYPLVMP-SFDTDPHIWLP-----PDPVNKDDDTDIVANN 291
Query: 582 DDIDTENVAVDSTLVEDSPADQNNPELV 609
DD +++N A + + D AD+N ++V
Sbjct: 292 DD-NSDNNAAEGLSLSDGEADKNWLDIV 318
>08_02_1482 -
27428208-27428514,27428605-27428906,27431176-27432228,
27432305-27432421,27432510-27432843,27433064-27433188,
27433408-27433475,27433555-27433636,27433753-27433866,
27433942-27434042,27434145-27434234,27434615-27434819
Length = 965
Score = 31.9 bits (69), Expect = 2.8
Identities = 24/84 (28%), Positives = 48/84 (57%), Gaps = 11/84 (13%)
Query: 354 QVTPLQPNNEKESNIPKIESDMKYEKVE-TLTPKT--PSSVAFDVTSGEAVSDDMIQIVQ 410
+ T P NE + P+ +++KV +L P+ PSSV SGE SD++++ +
Sbjct: 663 EYTSQTPPNEILKHTPR-----RFDKVRRSLYPENDNPSSVDRSEFSGEVSSDEVVKDMS 717
Query: 411 SLDSSSEEISPT---KESITADES 431
++D ++++ P+ +E++T+D S
Sbjct: 718 TIDEVAKDMCPSDAEQETLTSDIS 741
>06_01_0558 -
3968211-3969475,3970198-3970266,3970374-3970529,
3971075-3971405
Length = 606
Score = 31.1 bits (67), Expect = 4.9
Identities = 12/27 (44%), Positives = 19/27 (70%)
Query: 917 AFDVAMSMNNRILYENSLSGKNPKPIC 943
+F MSMN+ +L +N++SG+ P IC
Sbjct: 436 SFPTTMSMNHLVLNDNNISGEIPTSIC 462
>01_01_1129 - 8948612-8950117,8951354-8951503
Length = 551
Score = 31.1 bits (67), Expect = 4.9
Identities = 17/57 (29%), Positives = 29/57 (50%), Gaps = 5/57 (8%)
Query: 570 QQDDNNEIAGETDDIDTENVAVDSTLVEDSPADQNNPELVEDTPVSISSLSPVSTVT 626
Q++++NE+ +D D+ + D P ++ N E+ D SI S+ PVS T
Sbjct: 70 QEEEDNEMK-----VDAPQEKKDNEVTADVPEEKGNDEMRVDASESIESIEPVSRST 121
>02_01_0246 +
1617326-1617367,1618903-1624419,1625040-1625498,
1625603-1625887,1626016-1626030,1626339-1626419,
1626909-1627322,1627423-1627719,1627801-1629864
Length = 3057
Score = 30.7 bits (66), Expect = 6.4
Identities = 32/122 (26%), Positives = 53/122 (43%), Gaps = 7/122 (5%)
Query: 305 TEKYEPVAIIDQKA-EPTMKITTPNSVTEFIQDPSLEMSLAHITGQLSSMQVTPLQP--N 361
TE+ E ++ DQ+A + T +S++ ++ + ++A + T +P +
Sbjct: 305 TEQAEEASVDDQEALNQQPALETNDSLSVKAEETCHQSNVATCGEKTPEDDATTREPTVD 364
Query: 362 NEKESNIPKIESDMKYEKVETLTPKTPSSVAFDVTSGEAVSDDMIQIVQSLDSSSEEISP 421
++E N +E E V+T SSVAFD EA+ D S D S E
Sbjct: 365 TKEEQNQGSVEEMKDAEAVDTEETVQQSSVAFD----EAIQDHAATTNPSSDIQSIEPEE 420
Query: 422 TK 423
TK
Sbjct: 421 TK 422
>01_07_0078 - 40923115-40924016,40924341-40924416,40924686-40924718
Length = 336
Score = 30.7 bits (66), Expect = 6.4
Identities = 16/60 (26%), Positives = 32/60 (53%), Gaps = 2/60 (3%)
Query: 580 ETDDIDTENVAVDSTLVEDSPADQNNPELVEDTPVSISSLSPVSTVTQATD--VEPEQEV 637
E+ +T+N + +S+ D PA++ P+ E + ++ P T++TD +P QE+
Sbjct: 92 ESQSQETKNQSDESSKPSDQPAEKPGPDKAEGSAAEPNNPQPSPEPTKSTDETPKPNQEI 151
>12_02_0669 + 21695391-21697443,21698319-21699030,21699169-21699775
Length = 1123
Score = 30.3 bits (65), Expect = 8.5
Identities = 14/35 (40%), Positives = 21/35 (60%)
Query: 586 TENVAVDSTLVEDSPADQNNPELVEDTPVSISSLS 620
+ N A DS++ ED P + +VE+ PV+ SS S
Sbjct: 617 SSNGAPDSSIAEDKPDEPEESLIVEEVPVTASSES 651
>11_03_0191 - 11366831-11367676
Length = 281
Score = 30.3 bits (65), Expect = 8.5
Identities = 22/66 (33%), Positives = 34/66 (51%), Gaps = 6/66 (9%)
Query: 577 IAGETDDIDTENVA--VDSTLVED-SPADQNNPELVEDTPVSISSLSP---VSTVTQATD 630
+ GE + + TE+ VD T+ + +P +N P + +P SSL V + T+ TD
Sbjct: 142 LLGEVNMVATESAPYLVDQTVTQPPAPEIRNTPLISTSSPQPGSSLETPIQVDSETEGTD 201
Query: 631 VEPEQE 636
EPE E
Sbjct: 202 TEPEIE 207
>03_02_0806 + 11391880-11391916,11392247-11393634
Length = 474
Score = 30.3 bits (65), Expect = 8.5
Identities = 15/48 (31%), Positives = 25/48 (52%), Gaps = 1/48 (2%)
Query: 441 HYEGLTLPKKKNRNPQFALEDLDVLDLTEIGENIGDQFGIFGGRKRQN 488
H+EG TL + N F +E+ + LT + N G+ + G ++QN
Sbjct: 406 HFEGATLDLPRE-NYMFEIEEAGGIRLTCLAINAGEDLSVIGNFQQQN 452
>02_01_0776 + 5779673-5779987
Length = 104
Score = 30.3 bits (65), Expect = 8.5
Identities = 13/38 (34%), Positives = 20/38 (52%)
Query: 993 MGANGLAMVKPDENGGIPIPDPHGGVDAVIDAGEDNIE 1030
+G GLA G +P PD GG AV+ G+ +++
Sbjct: 28 VGLGGLADGNGAGRGWLPCPDSRGGTSAVVGGGQRHLD 65
>01_06_1514 -
37892552-37893074,37893291-37893367,37893471-37893587,
37893826-37893926,37895077-37895146,37895318-37895415,
37896326-37896419,37896792-37896882,37897222-37897547,
37898193-37898278,37899078-37899417
Length = 640
Score = 30.3 bits (65), Expect = 8.5
Identities = 46/222 (20%), Positives = 84/222 (37%), Gaps = 17/222 (7%)
Query: 316 QKAEPTMKITTPNSVTEFIQDPSLEMSLAHITGQLSSMQ--VTPLQPNNEKESNIPKIES 373
Q PT+K + + V F+ + E++ A I ++ + P+ N K K
Sbjct: 419 QSLPPTVKSSLRSKVNSFVVNE--EVTAAQIKAEMEKTLRWLVPIANNTTKSEVNCKPTG 476
Query: 374 DMKYEKVETLTPKTPSSVAFDVTSGEAVSDDMIQIVQSLDSSSEEISPTKESITADESRG 433
M ++ETL + E V+ + ++ S++ E SP K + + RG
Sbjct: 477 QMDLTRIETLYHADKEKTETHIL--ELVAW-LHHLISRSKSANGERSPIKSPVRSPTQRG 533
Query: 434 HFYNFGSHYEGLTLPKKKNRNPQFALEDLDVLDLTEIGENIGDQFGIFGGRKRQNKLKPN 493
H + N +P ED D+L + + I GI ++ + K + +
Sbjct: 534 HTITLSPN------KASSNSSPLLTQEDQDMLRDVKYRKFIP---GISKSQEFETKSRHS 584
Query: 494 KH-RDGRDGDEYDEMFDVISLDALTRKSDTGDIEFDKDKEKD 534
K R + ++ L ++ R D E D+ K D
Sbjct: 585 KQSRLSKSNSHSPSSGNMKELLSIRRMLPVIDFEIDRTKAMD 626
Database: rice
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.317 0.135 0.402
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 29,087,637
Number of Sequences: 37544
Number of extensions: 1243969
Number of successful extensions: 3145
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 3133
Number of HSP's gapped (non-prelim): 25
length of query: 1052
length of database: 14,793,348
effective HSP length: 89
effective length of query: 963
effective length of database: 11,451,932
effective search space: 11028210516
effective search space used: 11028210516
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 65 (30.3 bits)
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