GeneModel BLAST Result against tribolium

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002623-TA|BGIBMGA002623-PA|IPR001547|Glycoside
hydrolase, family 5, IPR001734|Na+/solute symporter
         (455 letters)

Database: tribolium 
           317 sequences; 114,650 total letters

Searching....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF222294-1|ABN79654.1|  451|Tribolium castaneum ecdysis triggeri...    26   0.63 
AM292372-1|CAL23184.2|  771|Tribolium castaneum gustatory recept...    23   4.4  
AM292362-1|CAL23174.2|  398|Tribolium castaneum gustatory recept...    22   7.8  

>EF222294-1|ABN79654.1|  451|Tribolium castaneum ecdysis triggering
           hormone receptorisoform B protein.
          Length = 451

 Score = 25.8 bits (54), Expect = 0.63
 Identities = 13/45 (28%), Positives = 25/45 (55%)

Query: 63  LVPVCFSLVASFISGISLLGTPTELYLFGTAYVFSLFGAVAMSLI 107
           +V VCFSLV   +  +  LG+    ++F  A +  ++  +A +L+
Sbjct: 221 IVFVCFSLVEDTLPCVFFLGSILIFFIFPLAILIIVYILIAKTLM 265


>AM292372-1|CAL23184.2|  771|Tribolium castaneum gustatory receptor
           candidate 51 protein.
          Length = 771

 Score = 23.0 bits (47), Expect = 4.4
 Identities = 10/24 (41%), Positives = 18/24 (75%), Gaps = 1/24 (4%)

Query: 342 ICFGLVFVVEKLGSVLQLTMSLSS 365
           +C G +F++  LGS+LQ+ +S+ S
Sbjct: 670 LCNG-IFLLLTLGSLLQMVISMDS 692


>AM292362-1|CAL23174.2|  398|Tribolium castaneum gustatory receptor
           candidate 41 protein.
          Length = 398

 Score = 22.2 bits (45), Expect = 7.8
 Identities = 10/19 (52%), Positives = 15/19 (78%), Gaps = 2/19 (10%)

Query: 90  FGTAYVFSLFGAVAMSLIL 108
           +GT Y  SLFG+ AM++I+
Sbjct: 371 YGTLY--SLFGSTAMNVII 387


  Database: tribolium
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 114,650
  Number of sequences in database:  317
  
Lambda     K      H
   0.327    0.140    0.435 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 93,200
Number of Sequences: 317
Number of extensions: 3745
Number of successful extensions: 12
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 11
Number of HSP's gapped (non-prelim): 4
length of query: 455
length of database: 114,650
effective HSP length: 59
effective length of query: 396
effective length of database: 95,947
effective search space: 37995012
effective search space used: 37995012
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.7 bits)
S2: 45 (22.2 bits)