GeneModel BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002623-TA|BGIBMGA002623-PA|IPR001547|Glycoside
hydrolase, family 5, IPR001734|Na+/solute symporter
         (455 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC970.11c |wtf9||wtf element, Wtf2, pseudo|Schizosaccharomyces...    31   0.25 
SPAC17A2.02c |||DUF887 family protein|Schizosaccharomyces pombe|...    28   2.4  
SPBC839.11c |hut1||uridine diphosphate-N-acetylglucosamine trans...    27   5.4  
SPBC651.05c |dot2||EAP30 family protein Dot2|Schizosaccharomyces...    27   7.2  
SPMIT.06 |||mitochondrial DNA binding endonuclease|Schizosacchar...    27   7.2  
SPCC594.04c |||steroid oxidoreductase superfamily protein|Schizo...    27   7.2  
SPCC553.03 |pex1||AAA family ATPase Pex1 |Schizosaccharomyces po...    26   9.5  

>SPCC970.11c |wtf9||wtf element, Wtf2, pseudo|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 333

 Score = 31.5 bits (68), Expect = 0.25
 Identities = 33/106 (31%), Positives = 43/106 (40%), Gaps = 4/106 (3%)

Query: 65  PVCFSLVASFISGISLLGTPTELYLFGTAYVFSLFGAVAMSLILGSTFLPVFHELQITSV 124
           P+   L+ SF S I L   P   YL      F  +GAV  +L     F+     + +T  
Sbjct: 72  PLLIKLLISFTS-IILFNAPAVCYLKYKDAFFKNYGAVEWTLFGFWCFVCTLALIFLTYF 130

Query: 125 YEGGLKAVVWTDV-LQTIVMVSAMILVIFKSTIIVGGINEVLRRNW 169
           YE   KAV  T + L   V V+A+ L        VG  N   R  W
Sbjct: 131 YETWTKAVKVTVISLAQCVKVTAVFLAKCVKVTAVGLYNS--REKW 174


>SPAC17A2.02c |||DUF887 family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 290

 Score = 28.3 bits (60), Expect = 2.4
 Identities = 33/146 (22%), Positives = 61/146 (41%), Gaps = 8/146 (5%)

Query: 294 SAALSSLSTGLNSMAAVVLEDFWKPFCKVPTPKQSQIIVRLVVIILGCICFGLVFVVEKL 353
           S+A++    GL     + LE+F KPFC       +++   + VI+L  + + ++ +   L
Sbjct: 2   SSAVTPSDQGLLPRGPIALEEFVKPFC--DRFGLTKLPRHMHVILLSALFYQIINI---L 56

Query: 354 GSVLQLTMSLSSASMGPLAGVFLMGLFFPFIDSTVRWYVGLLVFRTTEIALLKPKLPDCL 413
             V+   +S   A +     +         + S V   +G    +  E+     KL    
Sbjct: 57  SPVISRHLSTHYAKLSKKTRLNWDAHVVSSVQSIVLICLGYTCLK--EVNAFPDKLFGYS 114

Query: 414 FPRGEVQYLPSGCTVWWDNWIAIRMV 439
              G++  L +G  V WD +I +R V
Sbjct: 115 VVAGDIYALTAGYFV-WDLYITVRYV 139


>SPBC839.11c |hut1||uridine diphosphate-N-acetylglucosamine
           transporter Hut1 |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 322

 Score = 27.1 bits (57), Expect = 5.4
 Identities = 17/52 (32%), Positives = 27/52 (51%), Gaps = 4/52 (7%)

Query: 346 LVFVVEKLGSVLQLTMSLSSASMGPLAGVFLMGLFFPFIDSTVRWYVGLLVF 397
           + F +EK GS+  +T++L+      L  VF     F    S+++W   LLVF
Sbjct: 252 IFFTLEKFGSITLVTITLTRKIFTMLLSVF----HFHHTVSSIQWLGILLVF 299


>SPBC651.05c |dot2||EAP30 family protein Dot2|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 252

 Score = 26.6 bits (56), Expect = 7.2
 Identities = 17/67 (25%), Positives = 31/67 (46%), Gaps = 1/67 (1%)

Query: 150 VIFKSTIIVGGIN-EVLRRNWSTDRLAFPSLTFDLTERHSIWSVSIGATFYWIGNIAVNQ 208
           V+ ++  I+G +   +LR N++ +R     +  DL  +  +W  S G    + G   +  
Sbjct: 182 VVLEAVEILGYVTISILRDNYAWERSRCIQVLNDLVSKSLLWIDSQGVEMAYWGASNLID 241

Query: 209 SMMQRFL 215
              QRFL
Sbjct: 242 DQAQRFL 248


>SPMIT.06 |||mitochondrial DNA binding
           endonuclease|Schizosaccharomyces pombe|chr
           mitochondrial|||Manual
          Length = 807

 Score = 26.6 bits (56), Expect = 7.2
 Identities = 11/21 (52%), Positives = 13/21 (61%)

Query: 49  KSTQDYLMGGRNMKLVPVCFS 69
           K T DYLM   N K +P+C S
Sbjct: 769 KGTLDYLMAKANRKQIPLCRS 789


>SPCC594.04c |||steroid oxidoreductase superfamily
           protein|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 338

 Score = 26.6 bits (56), Expect = 7.2
 Identities = 13/36 (36%), Positives = 19/36 (52%)

Query: 375 FLMGLFFPFIDSTVRWYVGLLVFRTTEIALLKPKLP 410
           F++GL   FI   V W V +    T+++  L P LP
Sbjct: 47  FVVGLLLSFILGNVLWGVSVWTKNTSQVDRLWPILP 82


>SPCC553.03 |pex1||AAA family ATPase Pex1 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 937

 Score = 26.2 bits (55), Expect = 9.5
 Identities = 12/30 (40%), Positives = 16/30 (53%)

Query: 49  KSTQDYLMGGRNMKLVPVCFSLVASFISGI 78
           K    YLM G  +KLV +  S   S +SG+
Sbjct: 295 KLKNSYLMDGMTLKLVDIAVSYSVSGLSGV 324


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.327    0.140    0.435 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,776,749
Number of Sequences: 5004
Number of extensions: 66135
Number of successful extensions: 177
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 172
Number of HSP's gapped (non-prelim): 8
length of query: 455
length of database: 2,362,478
effective HSP length: 75
effective length of query: 380
effective length of database: 1,987,178
effective search space: 755127640
effective search space used: 755127640
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.7 bits)
S2: 55 (26.2 bits)