GeneModel BLAST Result against rice

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002623-TA|BGIBMGA002623-PA|IPR001547|Glycoside
hydrolase, family 5, IPR001734|Na+/solute symporter
         (455 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_06_1774 + 39803747-39803825,39805338-39805555,39805856-398064...    32   1.1  
07_01_0676 + 5062778-5063089,5063912-5064194,5064883-5065976           31   2.5  
08_01_0846 - 8294616-8294828,8294938-8295019,8295661-8295803           29   5.8  
07_03_1291 + 25545749-25546262,25546989-25547669,25547693-255477...    29   5.8  

>01_06_1774 +
           39803747-39803825,39805338-39805555,39805856-39806436,
           39807239-39808136
          Length = 591

 Score = 31.9 bits (69), Expect = 1.1
 Identities = 30/115 (26%), Positives = 57/115 (49%), Gaps = 14/115 (12%)

Query: 61  MKLVPVCFSLVASFISGIS-----LLGTPTELYLFGTAYVFSLFGAVAMSLILGSTFLPV 115
           +++VPVC S V  F++        +L T T    FGT +       V++SLI  + F+P+
Sbjct: 331 IRIVPVCISGVLCFVALAQQFTYIILQTFTMDCHFGTHFEIPAGSVVSISLIALTLFIPI 390

Query: 116 FHELQITSVYEG--GLKAVVWTDVLQTIVMVSAMILVIFKSTIIVGGINEVLRRN 168
           +  + +  +  G  G+++ +      T++    + L I   +++V G+ E  RRN
Sbjct: 391 YDRI-LVPIARGFTGVESGI------TLLQRQGIGLAISPISMVVAGLVERKRRN 438


>07_01_0676 + 5062778-5063089,5063912-5064194,5064883-5065976
          Length = 562

 Score = 30.7 bits (66), Expect = 2.5
 Identities = 22/90 (24%), Positives = 44/90 (48%), Gaps = 10/90 (11%)

Query: 25  YAVFIMMLTI--CGLIGIYFGFV----NKQKSTQDYLMGGRNMKLVPVCFSLVASFISGI 78
           + +F++  T+  C  I + F F+    +  K   D L  G  + +V  C +++ S ++ +
Sbjct: 465 FKIFVVSNTVAMCSAIVVVFCFIWAWRDPVKFKLDQLTWGHRLTVV-ACLAMIVSLMTSV 523

Query: 79  SLLGTPTELYLFGTAYVFSLFGAVAMSLIL 108
            L   PTE +L   AY+    GA   ++++
Sbjct: 524 YLTVLPTERWL---AYLVIAIGACTPAVVI 550


>08_01_0846 - 8294616-8294828,8294938-8295019,8295661-8295803
          Length = 145

 Score = 29.5 bits (63), Expect = 5.8
 Identities = 12/25 (48%), Positives = 17/25 (68%)

Query: 370 PLAGVFLMGLFFPFIDSTVRWYVGL 394
           PL  + ++GLF PF++S  RW  GL
Sbjct: 5   PLPLLLVLGLFVPFVESGRRWRRGL 29


>07_03_1291 +
           25545749-25546262,25546989-25547669,25547693-25547751,
           25549152-25549242,25549330-25549743,25550191-25550243,
           25550947-25551177,25551492-25551708,25551790-25551890,
           25552446-25552532,25553536-25553676,25553839-25553961,
           25554070-25554522,25554931-25555308,25555410-25556060,
           25556264-25556368,25556482-25556707,25557204-25557241
          Length = 1520

 Score = 29.5 bits (63), Expect = 5.8
 Identities = 22/101 (21%), Positives = 48/101 (47%), Gaps = 6/101 (5%)

Query: 94  YVFSLFGAVAMSLILGSTFL--PVFHELQITSVYEGGLKAVVWTDVLQTIVMVSAMILVI 151
           Y+F L   V   L+  +  +  P++H+    ++       V+   V   ++ + + +L  
Sbjct: 108 YLFILVADVLQRLLERNLQIRHPIYHDRPCATIQYADDTLVICRAVEDDVLALKSALLQF 167

Query: 152 FKSTIIVGGINEVLR---RNWSTDRLAFPSLTFDLTERHSI 189
            K+T ++  + ++L     N+ T RL   ++T +L E H+I
Sbjct: 168 SKATDVLATVQQILSIGISNFVTSRLTVAAMT-ELQELHTI 207


  Database: rice
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.327    0.140    0.435 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,155,409
Number of Sequences: 37544
Number of extensions: 408779
Number of successful extensions: 1083
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 1081
Number of HSP's gapped (non-prelim): 4
length of query: 455
length of database: 14,793,348
effective HSP length: 84
effective length of query: 371
effective length of database: 11,639,652
effective search space: 4318310892
effective search space used: 4318310892
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.7 bits)
S2: 62 (29.1 bits)