GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002623-TA|BGIBMGA002623-PA|IPR001547|Glycoside
hydrolase, family 5, IPR001734|Na+/solute symporter
         (455 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ244074-1|ABB36784.1|  517|Apis mellifera cytochrome P450 monoo...    23   5.3  
AF069739-1|AAC63272.2|  690|Apis mellifera translation initiatio...    23   5.3  

>DQ244074-1|ABB36784.1|  517|Apis mellifera cytochrome P450
           monooxygenase protein.
          Length = 517

 Score = 23.0 bits (47), Expect = 5.3
 Identities = 10/30 (33%), Positives = 17/30 (56%)

Query: 78  ISLLGTPTELYLFGTAYVFSLFGAVAMSLI 107
           +S +  P  L +FGT ++FS  G   ++ I
Sbjct: 50  VSKVPGPFSLPIFGTRWIFSCIGYYKLNKI 79


>AF069739-1|AAC63272.2|  690|Apis mellifera translation initiation
           factor 2 protein.
          Length = 690

 Score = 23.0 bits (47), Expect = 5.3
 Identities = 13/38 (34%), Positives = 21/38 (55%), Gaps = 1/38 (2%)

Query: 317 KPFCKVPTPKQSQIIVR-LVVIILGCICFGLVFVVEKL 353
           K   K P P +SQ+I R  +V I+G +  G   +++ L
Sbjct: 128 KDITKRPLPNESQLIKRHPIVTIMGHVDHGKTTLLDAL 165


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.327    0.140    0.435 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 105,974
Number of Sequences: 429
Number of extensions: 3791
Number of successful extensions: 15
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 14
Number of HSP's gapped (non-prelim): 2
length of query: 455
length of database: 140,377
effective HSP length: 60
effective length of query: 395
effective length of database: 114,637
effective search space: 45281615
effective search space used: 45281615
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.7 bits)
S2: 45 (22.2 bits)