GeneModel BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002622-TA|BGIBMGA002622-PA|undefined
         (75 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC513.05 |ams1||alpha-mannosidase |Schizosaccharomyces pombe|c...    25   1.2  
SPBC17F3.02 |nak1|orb3, mor4|PAK-related kinase Nak1|Schizosacch...    23   4.9  
SPBC19C7.05 |||cell wall organization protein |Schizosaccharomyc...    23   6.5  

>SPAC513.05 |ams1||alpha-mannosidase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1077

 Score = 25.0 bits (52), Expect = 1.2
 Identities = 11/26 (42%), Positives = 17/26 (65%), Gaps = 1/26 (3%)

Query: 51  NSKETCLINTTSINMK-AIKETAENR 75
           N ++ CL+NT   N++  I ET EN+
Sbjct: 662 NKEQLCLLNTLPWNVRGVITETEENK 687


>SPBC17F3.02 |nak1|orb3, mor4|PAK-related kinase
           Nak1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 652

 Score = 23.0 bits (47), Expect = 4.9
 Identities = 8/13 (61%), Positives = 8/13 (61%)

Query: 37  PPHPTEDPFIQAY 49
           PPH  EDPF   Y
Sbjct: 207 PPHAKEDPFRAVY 219


>SPBC19C7.05 |||cell wall organization protein |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 150

 Score = 22.6 bits (46), Expect = 6.5
 Identities = 9/17 (52%), Positives = 10/17 (58%)

Query: 38  PHPTEDPFIQAYGNSKE 54
           P PTE P + AY  S E
Sbjct: 107 PPPTEPPTVPAYETSSE 123


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.316    0.129    0.374 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 269,087
Number of Sequences: 5004
Number of extensions: 7361
Number of successful extensions: 14
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 12
Number of HSP's gapped (non-prelim): 3
length of query: 75
length of database: 2,362,478
effective HSP length: 55
effective length of query: 20
effective length of database: 2,087,258
effective search space: 41745160
effective search space used: 41745160
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 45 (22.2 bits)