GeneModel BLAST Result against rice

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002622-TA|BGIBMGA002622-PA|undefined
         (75 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_06_0271 - 28055367-28055402,28055503-28055622,28055710-280558...    29   0.63 
07_01_0535 + 3952066-3952986                                           26   3.4  
11_04_0011 - 12147113-12147278,12148216-12149145,12149463-121498...    26   4.5  
12_01_0292 + 2193309-2193338,2193565-2193640,2193744-2195203,219...    25   5.9  
02_01_0244 + 1603381-1603792,1604054-1604132,1604993-1605862,160...    25   5.9  
02_02_0433 - 10178497-10178844,10180394-10180444,10181201-101812...    25   7.8  
01_02_0111 - 11220179-11220322,11220430-11220497,11220611-112206...    25   7.8  

>01_06_0271 -
           28055367-28055402,28055503-28055622,28055710-28055892,
           28056006-28056145,28056347-28056595,28056706-28056823,
           28056924-28056999,28057096-28057162,28057282-28057369,
           28057506-28057616,28058127-28058221,28058305-28058344,
           28058736-28058812,28058978-28059026,28059464-28059520,
           28059624-28059713,28059833-28059896,28060076-28060245
          Length = 609

 Score = 28.7 bits (61), Expect = 0.63
 Identities = 12/29 (41%), Positives = 19/29 (65%)

Query: 46  IQAYGNSKETCLINTTSINMKAIKETAEN 74
           I  YGNS E+CL+   + N +A++  AE+
Sbjct: 498 IWVYGNSFESCLVAVVNPNKQALERWAES 526


>07_01_0535 + 3952066-3952986
          Length = 306

 Score = 26.2 bits (55), Expect = 3.4
 Identities = 10/27 (37%), Positives = 18/27 (66%)

Query: 29 QIRRLHKEPPHPTEDPFIQAYGNSKET 55
          Q + +  +PP+P ED  +Q+ G+ +ET
Sbjct: 54 QRQGMELQPPYPYEDQELQSEGDEQET 80


>11_04_0011 -
           12147113-12147278,12148216-12149145,12149463-12149834,
           12149884-12150007,12150343-12150391
          Length = 546

 Score = 25.8 bits (54), Expect = 4.5
 Identities = 12/30 (40%), Positives = 19/30 (63%), Gaps = 6/30 (20%)

Query: 29  QIRRLHKEPPHPTEDPF------IQAYGNS 52
           Q++ L +E  HPTE+PF      ++ YGN+
Sbjct: 114 QLQELEEEEIHPTENPFQFEEDLLEDYGNT 143


>12_01_0292 +
           2193309-2193338,2193565-2193640,2193744-2195203,
           2195479-2195505,2195794-2196024,2196523-2196692,
           2197278-2197421,2198036-2198083,2198503-2198566
          Length = 749

 Score = 25.4 bits (53), Expect = 5.9
 Identities = 10/29 (34%), Positives = 15/29 (51%)

Query: 38  PHPTEDPFIQAYGNSKETCLINTTSINMK 66
           PHP  DP+      +  +C  N+TS+  K
Sbjct: 503 PHPHADPYNYFSDENPNSCSENSTSLKAK 531


>02_01_0244 +
           1603381-1603792,1604054-1604132,1604993-1605862,
           1606019-1606276,1606675-1606834
          Length = 592

 Score = 25.4 bits (53), Expect = 5.9
 Identities = 10/22 (45%), Positives = 16/22 (72%)

Query: 45  FIQAYGNSKETCLINTTSINMK 66
           +I AYG  + T L+N TSI+++
Sbjct: 200 YINAYGRLEGTSLLNATSISIE 221


>02_02_0433 -
           10178497-10178844,10180394-10180444,10181201-10181263,
           10181427-10181471,10181772-10181816,10183894-10183923,
           10184182-10184289,10186459-10186524,10186595-10186624,
           10187147-10187501,10189323-10189345,10191421-10191447,
           10192131-10192210,10192367-10192550
          Length = 484

 Score = 25.0 bits (52), Expect = 7.8
 Identities = 9/36 (25%), Positives = 18/36 (50%)

Query: 39  HPTEDPFIQAYGNSKETCLINTTSINMKAIKETAEN 74
           HP  +   Q   + + +C+ +TTS+    + E + N
Sbjct: 183 HPHHNALQQQASSPRSSCITSTTSLGSNGVLEFSNN 218


>01_02_0111 -
          11220179-11220322,11220430-11220497,11220611-11220644,
          11220735-11220766,11220900-11220959,11221276-11221729
          Length = 263

 Score = 25.0 bits (52), Expect = 7.8
 Identities = 8/13 (61%), Positives = 9/13 (69%)

Query: 32 RLHKEPPHPTEDP 44
          RLH+ PPHP   P
Sbjct: 62 RLHRSPPHPPPPP 74


  Database: rice
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.316    0.129    0.374 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,771,482
Number of Sequences: 37544
Number of extensions: 47327
Number of successful extensions: 99
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 92
Number of HSP's gapped (non-prelim): 7
length of query: 75
length of database: 14,793,348
effective HSP length: 54
effective length of query: 21
effective length of database: 12,765,972
effective search space: 268085412
effective search space used: 268085412
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 52 (25.0 bits)