GeneModel BLAST Result against celegans

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002622-TA|BGIBMGA002622-PA|undefined
         (75 letters)

Database: celegans 
           27,539 sequences; 12,573,161 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC084158-11|AAK68558.1|  555|Caenorhabditis elegans Hypothetical...    26   3.7  
AC025726-27|AAK73932.2|  383|Caenorhabditis elegans Hypothetical...    25   4.9  
U41026-6|AAA82353.1| 1081|Caenorhabditis elegans Hypothetical pr...    25   8.5  

>AC084158-11|AAK68558.1|  555|Caenorhabditis elegans Hypothetical
           protein Y69A2AR.14 protein.
          Length = 555

 Score = 25.8 bits (54), Expect = 3.7
 Identities = 11/41 (26%), Positives = 21/41 (51%)

Query: 34  HKEPPHPTEDPFIQAYGNSKETCLINTTSINMKAIKETAEN 74
           H +PP P   P  +A     ++  + TT+ + K  +++ EN
Sbjct: 305 HPKPPPPPPPPIHEAQPEVSDSNKLGTTAASRKDCEQSDEN 345


>AC025726-27|AAK73932.2|  383|Caenorhabditis elegans Hypothetical
          protein Y71G12B.6 protein.
          Length = 383

 Score = 25.4 bits (53), Expect = 4.9
 Identities = 12/24 (50%), Positives = 15/24 (62%)

Query: 51 NSKETCLINTTSINMKAIKETAEN 74
          N+    LIN +SIN +AIK   EN
Sbjct: 42 NNPSLTLINLSSINEEAIKNLIEN 65


>U41026-6|AAA82353.1| 1081|Caenorhabditis elegans Hypothetical
           protein C28G1.4 protein.
          Length = 1081

 Score = 24.6 bits (51), Expect = 8.5
 Identities = 11/28 (39%), Positives = 16/28 (57%)

Query: 46  IQAYGNSKETCLINTTSINMKAIKETAE 73
           +  Y N+KET  +N  S+    I ETA+
Sbjct: 476 LSKYENTKETDNLNVQSLISSGISETAD 503


  Database: celegans
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 12,573,161
  Number of sequences in database:  27,539
  
Lambda     K      H
   0.316    0.129    0.374 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,505,334
Number of Sequences: 27539
Number of extensions: 42003
Number of successful extensions: 80
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 77
Number of HSP's gapped (non-prelim): 3
length of query: 75
length of database: 12,573,161
effective HSP length: 55
effective length of query: 20
effective length of database: 11,058,516
effective search space: 221170320
effective search space used: 221170320
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 51 (24.6 bits)