GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002622-TA|BGIBMGA002622-PA|undefined
         (75 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667192-1|ABG75744.1|  489|Apis mellifera pH-sensitive chloride...    20   3.8  
DQ667191-1|ABG75743.1|  475|Apis mellifera pH-sensitive chloride...    20   3.8  
DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride...    20   3.8  
DQ667189-1|ABG75741.1|  458|Apis mellifera pH-sensitive chloride...    20   3.8  
AF498306-5|AAM19330.1|  456|Apis mellifera dopamine receptor typ...    19   5.0  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              19   6.7  

>DQ667192-1|ABG75744.1|  489|Apis mellifera pH-sensitive chloride
           channel variant 4 protein.
          Length = 489

 Score = 19.8 bits (39), Expect = 3.8
 Identities = 6/6 (100%), Positives = 6/6 (100%)

Query: 35  KEPPHP 40
           KEPPHP
Sbjct: 450 KEPPHP 455


>DQ667191-1|ABG75743.1|  475|Apis mellifera pH-sensitive chloride
           channel variant 3 protein.
          Length = 475

 Score = 19.8 bits (39), Expect = 3.8
 Identities = 6/6 (100%), Positives = 6/6 (100%)

Query: 35  KEPPHP 40
           KEPPHP
Sbjct: 436 KEPPHP 441


>DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride
           channel variant 1 protein.
          Length = 509

 Score = 19.8 bits (39), Expect = 3.8
 Identities = 6/6 (100%), Positives = 6/6 (100%)

Query: 35  KEPPHP 40
           KEPPHP
Sbjct: 470 KEPPHP 475


>DQ667189-1|ABG75741.1|  458|Apis mellifera pH-sensitive chloride
           channel protein.
          Length = 458

 Score = 19.8 bits (39), Expect = 3.8
 Identities = 6/6 (100%), Positives = 6/6 (100%)

Query: 35  KEPPHP 40
           KEPPHP
Sbjct: 419 KEPPHP 424


>AF498306-5|AAM19330.1|  456|Apis mellifera dopamine receptor type
           D2 protein.
          Length = 456

 Score = 19.4 bits (38), Expect = 5.0
 Identities = 8/20 (40%), Positives = 10/20 (50%)

Query: 56  CLINTTSINMKAIKETAENR 75
           CL+    +   AI E  ENR
Sbjct: 92  CLVGLVVMPFSAIYEVLENR 111


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 19.0 bits (37), Expect = 6.7
 Identities = 7/15 (46%), Positives = 9/15 (60%)

Query: 35   KEPPHPTEDPFIQAY 49
            K  PHPT++  I  Y
Sbjct: 1385 KVRPHPTDNAPIHGY 1399


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.316    0.129    0.374 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,640
Number of Sequences: 429
Number of extensions: 581
Number of successful extensions: 6
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of query: 75
length of database: 140,377
effective HSP length: 46
effective length of query: 29
effective length of database: 120,643
effective search space:  3498647
effective search space used:  3498647
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 36 (19.4 bits)
S2: 36 (18.6 bits)