GeneModel BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002621-TA|BGIBMGA002621-PA|IPR001734|Na+/solute
symporter
         (279 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC550.07 |||acetamidase |Schizosaccharomyces pombe|chr 3|||Manual    27   3.9  
SPBC1289.13c |||alpha-1,2-galactosyltransferase|Schizosaccharomy...    26   5.2  
SPAC3H5.04 |aar2||U5 snRNP-associated protein Aar2|Schizosacchar...    26   5.2  

>SPCC550.07 |||acetamidase |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 533

 Score = 26.6 bits (56), Expect = 3.9
 Identities = 14/42 (33%), Positives = 18/42 (42%), Gaps = 2/42 (4%)

Query: 114 DPNPLTRHTIWSLIMGGVIYWLQANAVNQTMLAKAKDQLLPL 155
           D  PL     W LI    +YWL    V   +  K  + +LPL
Sbjct: 351 DVEPLDHKYSWDLI--SEMYWLDGGKVYYDLFNKVGEPILPL 390


>SPBC1289.13c
          |||alpha-1,2-galactosyltransferase|Schizosaccharomyces
          pombe|chr 2|||Manual
          Length = 375

 Score = 26.2 bits (55), Expect = 5.2
 Identities = 9/21 (42%), Positives = 14/21 (66%)

Query: 20 WVDYVVFVFMLAISAVVGVYW 40
          W  YV+   +L+I A+ GV+W
Sbjct: 3  WYSYVIPAVILSIIAISGVWW 23


>SPAC3H5.04 |aar2||U5 snRNP-associated protein
          Aar2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 346

 Score = 26.2 bits (55), Expect = 5.2
 Identities = 12/49 (24%), Positives = 23/49 (46%)

Query: 36 VGVYWGFMKKQTTQTDYLLGGRNMKGGLQAVVWTDVIQITAMFGAMAIV 84
          +  Y+  + + + +   L G RN+KGG+    W+       + G  A+V
Sbjct: 9  LNTYYVGIDQSSYEASKLPGIRNVKGGIHLFTWSPTYPAGLISGVFAMV 57


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.327    0.142    0.442 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,079,257
Number of Sequences: 5004
Number of extensions: 37015
Number of successful extensions: 102
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 100
Number of HSP's gapped (non-prelim): 3
length of query: 279
length of database: 2,362,478
effective HSP length: 72
effective length of query: 207
effective length of database: 2,002,190
effective search space: 414453330
effective search space used: 414453330
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.7 bits)
S2: 53 (25.4 bits)