GeneModel BLAST Result against rice

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002621-TA|BGIBMGA002621-PA|IPR001734|Na+/solute
symporter
         (279 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_04_0637 - 24651198-24651941                                         29   5.5  
07_03_0755 - 21261855-21261945,21262277-21262323,21262819-212630...    28   7.2  

>02_04_0637 - 24651198-24651941
          Length = 247

 Score = 28.7 bits (61), Expect = 5.5
 Identities = 16/49 (32%), Positives = 24/49 (48%)

Query: 38 VYWGFMKKQTTQTDYLLGGRNMKGGLQAVVWTDVIQITAMFGAMAIVAV 86
          V+W   +   TQ   +LGG  ++     +V   +I I   F AM IVA+
Sbjct: 15 VHWAVAEPDNTQRRGVLGGVRLRIDTVCLVMVCMILIAVAFLAMMIVAI 63


>07_03_0755 -
           21261855-21261945,21262277-21262323,21262819-21263014,
           21263239-21263340,21263602-21263678,21264037-21264236,
           21264324-21264681,21265245-21265301,21265434-21266192,
           21266287-21266468,21266651-21266813
          Length = 743

 Score = 28.3 bits (60), Expect = 7.2
 Identities = 18/68 (26%), Positives = 31/68 (45%), Gaps = 1/68 (1%)

Query: 193 VVLEDFYKPFYSK-ELSDRQTAWLMRGVVILLGALCVALVFIVEKMGTILQLTMTLESMT 251
           V L D  K  Y +  + +++ AW  + +  L G     L  +VE  GT+  L   ++ +T
Sbjct: 367 VKLVDIVKELYERIAIMEKKQAWSNKELKYLQGVNERLLKRVVELKGTVKTLNSKIDPLT 426

Query: 252 MGPQLGVF 259
           +   L  F
Sbjct: 427 LDDSLSQF 434


  Database: rice
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.327    0.142    0.442 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,191,163
Number of Sequences: 37544
Number of extensions: 265191
Number of successful extensions: 642
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 640
Number of HSP's gapped (non-prelim): 3
length of query: 279
length of database: 14,793,348
effective HSP length: 81
effective length of query: 198
effective length of database: 11,752,284
effective search space: 2326952232
effective search space used: 2326952232
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.7 bits)
S2: 59 (27.9 bits)