Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA002621-TA|BGIBMGA002621-PA|IPR001734|Na+/solute
symporter
(279 letters)
Database: celegans
27,539 sequences; 12,573,161 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z73898-8|CAJ90496.1| 431|Caenorhabditis elegans Hypothetical pr... 56 3e-08
Z73898-7|CAA98070.1| 577|Caenorhabditis elegans Hypothetical pr... 56 3e-08
AF026214-2|AAB71314.2| 446|Caenorhabditis elegans Hypothetical ... 54 9e-08
AF039051-10|AAB94259.3| 313|Caenorhabditis elegans Serpentine r... 30 1.6
U64835-7|AAG24198.2| 427|Caenorhabditis elegans Hypothetical pr... 29 4.9
U64835-3|AAO25999.1| 338|Caenorhabditis elegans Serpentine rece... 29 4.9
AC006670-5|AAF39912.2| 356|Caenorhabditis elegans Hypothetical ... 28 6.4
AC006670-4|AAU20843.1| 518|Caenorhabditis elegans Hypothetical ... 28 6.4
AF148954-1|AAD37411.1| 4280|Caenorhabditis elegans myotactin for... 28 8.5
AF148953-1|AAD37410.1| 4450|Caenorhabditis elegans myotactin for... 28 8.5
AF040648-5|AAK21413.1| 4450|Caenorhabditis elegans Lethal protei... 28 8.5
AF040648-4|AAK21414.2| 4280|Caenorhabditis elegans Lethal protei... 28 8.5
>Z73898-8|CAJ90496.1| 431|Caenorhabditis elegans Hypothetical
protein ZK822.5b protein.
Length = 431
Score = 56.0 bits (129), Expect = 3e-08
Identities = 30/134 (22%), Positives = 57/134 (42%), Gaps = 1/134 (0%)
Query: 133 YWLQANAVNQTMLAKAKDQLLPLLVMDVLGDIPGLPGVFVAGIFXXXXXXXXXXXXXXXX 192
Y+ N + +T K D + D+L PGL G++V+ I
Sbjct: 165 YFYNCNPL-ETGEVKESDHITISFARDILQPTPGLFGLYVSCIMSATLSTLSSGMNSMAA 223
Query: 193 VVLEDFYKPFYSKELSDRQTAWLMRGVVILLGALCVALVFIVEKMGTILQLTMTLESMTM 252
+ EDF K +++D L + +V++ G L F+ E +G L++ +++
Sbjct: 224 AIYEDFLKNSLDGKITDTGATRLNKIIVLICGLSSTGLAFLAEVLGGSLRICISVMGAMS 283
Query: 253 GPQLGVFTMGILMP 266
GP + +F + + P
Sbjct: 284 GPMVAIFVLALFFP 297
Score = 50.4 bits (115), Expect = 1e-06
Identities = 32/90 (35%), Positives = 45/90 (50%), Gaps = 3/90 (3%)
Query: 61 GGLQAVVWTDVIQITAMFGAMAIVAVKGTMD--VGGIGVVWQRNMDSGRI-EAPDWDPNP 117
GGL+AVVWTD +Q M+ + + KG VGG+ V DSGRI E D
Sbjct: 38 GGLKAVVWTDSLQAVIMYTGVFTLIYKGLSHPRVGGLERVLSIAWDSGRISELGRMDWRI 97
Query: 118 LTRHTIWSLIMGGVIYWLQANAVNQTMLAK 147
+++W + G I WL + VNQ + +
Sbjct: 98 DQYNSLWINLFSGTIVWLASFGVNQLAIQR 127
>Z73898-7|CAA98070.1| 577|Caenorhabditis elegans Hypothetical
protein ZK822.5a protein.
Length = 577
Score = 56.0 bits (129), Expect = 3e-08
Identities = 30/134 (22%), Positives = 57/134 (42%), Gaps = 1/134 (0%)
Query: 133 YWLQANAVNQTMLAKAKDQLLPLLVMDVLGDIPGLPGVFVAGIFXXXXXXXXXXXXXXXX 192
Y+ N + +T K D + D+L PGL G++V+ I
Sbjct: 311 YFYNCNPL-ETGEVKESDHITISFARDILQPTPGLFGLYVSCIMSATLSTLSSGMNSMAA 369
Query: 193 VVLEDFYKPFYSKELSDRQTAWLMRGVVILLGALCVALVFIVEKMGTILQLTMTLESMTM 252
+ EDF K +++D L + +V++ G L F+ E +G L++ +++
Sbjct: 370 AIYEDFLKNSLDGKITDTGATRLNKIIVLICGLSSTGLAFLAEVLGGSLRICISVMGAMS 429
Query: 253 GPQLGVFTMGILMP 266
GP + +F + + P
Sbjct: 430 GPMVAIFVLALFFP 443
Score = 50.4 bits (115), Expect = 1e-06
Identities = 32/90 (35%), Positives = 45/90 (50%), Gaps = 3/90 (3%)
Query: 61 GGLQAVVWTDVIQITAMFGAMAIVAVKGTMD--VGGIGVVWQRNMDSGRI-EAPDWDPNP 117
GGL+AVVWTD +Q M+ + + KG VGG+ V DSGRI E D
Sbjct: 184 GGLKAVVWTDSLQAVIMYTGVFTLIYKGLSHPRVGGLERVLSIAWDSGRISELGRMDWRI 243
Query: 118 LTRHTIWSLIMGGVIYWLQANAVNQTMLAK 147
+++W + G I WL + VNQ + +
Sbjct: 244 DQYNSLWINLFSGTIVWLASFGVNQLAIQR 273
Score = 31.5 bits (68), Expect = 0.69
Identities = 14/47 (29%), Positives = 24/47 (51%), Gaps = 7/47 (14%)
Query: 20 WVDYVVFVFMLAISAVVGVYWGFMKK-------QTTQTDYLLGGRNM 59
W+DY +F + +S GVY + +T + +YL+GGR +
Sbjct: 9 WLDYAIFGLSIGLSLSTGVYHAIKSRIILRRGDRTAKEEYLMGGRQL 55
>AF026214-2|AAB71314.2| 446|Caenorhabditis elegans Hypothetical
protein F52H2.4 protein.
Length = 446
Score = 54.4 bits (125), Expect = 9e-08
Identities = 33/124 (26%), Positives = 57/124 (45%), Gaps = 5/124 (4%)
Query: 150 DQLLPLLVMDVLGDIPGLPGVFVAGIFXXXXXXXXXXXXXXXXVVLEDFYKPFYSKE--- 206
++LLP VMDV PG G+F A ++ +V+ D +K + +
Sbjct: 227 NELLPRFVMDVTSKYPGSVGLFAAAVYSAGISTLSASFTAVSSIVINDVWKVYRERRKMA 286
Query: 207 -LSDRQTAWLMRGVVILLGALCVALVFIVEKM-GTILQLTMTLESMTMGPQLGVFTMGIL 264
L + Q MR + I+L + + + F+ + ILQ++ + GP LG F +G+
Sbjct: 287 PLRNDQVQNAMRILPIVLSFISIFVAFLCSMLQSIILQVSFIVFGAGGGPVLGSFVVGLF 346
Query: 265 MPWV 268
+P V
Sbjct: 347 VPRV 350
Score = 34.3 bits (75), Expect = 0.098
Identities = 24/87 (27%), Positives = 40/87 (45%), Gaps = 6/87 (6%)
Query: 61 GGLQAVVWTDVIQITAMFGAMAIVAVKGTMDVGGIGVVWQRNMDSGRIEAPDWDPNPLTR 120
GG++A + T IQ+ +F M + ++ I V+ + R NP R
Sbjct: 97 GGVKAGIHTSAIQMLLIFLTMTFIISISLREMS-IHDVYTSVVHGKRFRI-----NPTIR 150
Query: 121 HTIWSLIMGGVIYWLQANAVNQTMLAK 147
H++WSL++GG L A NQ + +
Sbjct: 151 HSVWSLLIGGTGNILALFAANQLSIQR 177
>AF039051-10|AAB94259.3| 313|Caenorhabditis elegans Serpentine
receptor, class i protein73 protein.
Length = 313
Score = 30.3 bits (65), Expect = 1.6
Identities = 14/42 (33%), Positives = 24/42 (57%)
Query: 230 LVFIVEKMGTILQLTMTLESMTMGPQLGVFTMGILMPWVDAT 271
LVF + T + LT ++++T+ P +T+GIL W D +
Sbjct: 49 LVFQLACTLTDIYLTFLMQAVTLFPTFAGYTVGILSTWFDVS 90
>U64835-7|AAG24198.2| 427|Caenorhabditis elegans Hypothetical
protein T09D3.4 protein.
Length = 427
Score = 28.7 bits (61), Expect = 4.9
Identities = 19/64 (29%), Positives = 32/64 (50%), Gaps = 6/64 (9%)
Query: 194 VLEDFYKPFYSKELSDRQTAWLMRGVVILLGALCVALVFIV------EKMGTILQLTMTL 247
++++ KP Y +LSD +TA+++ V++ G V + E + T L L T
Sbjct: 315 IIDEVCKPLYELQLSDTETAFILVQVLVYHGGEKVTPELVKMFDQLRETIATDLHLYYTK 374
Query: 248 ESMT 251
ES T
Sbjct: 375 ESQT 378
>U64835-3|AAO25999.1| 338|Caenorhabditis elegans Serpentine
receptor, class g (gamma)protein 27 protein.
Length = 338
Score = 28.7 bits (61), Expect = 4.9
Identities = 12/44 (27%), Positives = 25/44 (56%)
Query: 219 VVILLGALCVALVFIVEKMGTILQLTMTLESMTMGPQLGVFTMG 262
V + + + V++ F + + ++QL + L+SM P +G F +G
Sbjct: 237 VSLTIATIFVSIGFALMLVVQVMQLFVPLDSMVQNPWMGTFLLG 280
>AC006670-5|AAF39912.2| 356|Caenorhabditis elegans Hypothetical
protein K07A3.3a protein.
Length = 356
Score = 28.3 bits (60), Expect = 6.4
Identities = 16/53 (30%), Positives = 26/53 (49%)
Query: 205 KELSDRQTAWLMRGVVILLGALCVALVFIVEKMGTILQLTMTLESMTMGPQLG 257
K+L RQ L + +ILLGA F+ +K+ +L + + + T Q G
Sbjct: 182 KDLEKRQDMILDKSNMILLGASGTGKTFMTQKLAEVLDVPIVICDCTTLTQAG 234
>AC006670-4|AAU20843.1| 518|Caenorhabditis elegans Hypothetical
protein K07A3.3b protein.
Length = 518
Score = 28.3 bits (60), Expect = 6.4
Identities = 16/53 (30%), Positives = 26/53 (49%)
Query: 205 KELSDRQTAWLMRGVVILLGALCVALVFIVEKMGTILQLTMTLESMTMGPQLG 257
K+L RQ L + +ILLGA F+ +K+ +L + + + T Q G
Sbjct: 182 KDLEKRQDMILDKSNMILLGASGTGKTFMTQKLAEVLDVPIVICDCTTLTQAG 234
>AF148954-1|AAD37411.1| 4280|Caenorhabditis elegans myotactin form A
protein.
Length = 4280
Score = 27.9 bits (59), Expect = 8.5
Identities = 17/51 (33%), Positives = 28/51 (54%), Gaps = 5/51 (9%)
Query: 57 RNMKGGLQAVVWTDVIQITAMFGAMAIVAVKGTMDVGGIGVVWQ-RNMDSG 106
+ M GG AV+ TD +TA+ A ++A + T I + W+ RN ++G
Sbjct: 1696 KEMCGGTAAVMTTDAAALTALSTAPRVIAEEPT----SITIEWESRNREAG 1742
>AF148953-1|AAD37410.1| 4450|Caenorhabditis elegans myotactin form B
protein.
Length = 4450
Score = 27.9 bits (59), Expect = 8.5
Identities = 17/51 (33%), Positives = 28/51 (54%), Gaps = 5/51 (9%)
Query: 57 RNMKGGLQAVVWTDVIQITAMFGAMAIVAVKGTMDVGGIGVVWQ-RNMDSG 106
+ M GG AV+ TD +TA+ A ++A + T I + W+ RN ++G
Sbjct: 1696 KEMCGGTAAVMTTDAAALTALSTAPRVIAEEPT----SITIEWESRNREAG 1742
>AF040648-5|AAK21413.1| 4450|Caenorhabditis elegans Lethal protein
805, isoform b protein.
Length = 4450
Score = 27.9 bits (59), Expect = 8.5
Identities = 17/51 (33%), Positives = 28/51 (54%), Gaps = 5/51 (9%)
Query: 57 RNMKGGLQAVVWTDVIQITAMFGAMAIVAVKGTMDVGGIGVVWQ-RNMDSG 106
+ M GG AV+ TD +TA+ A ++A + T I + W+ RN ++G
Sbjct: 1696 KEMCGGTAAVMTTDAAALTALSTAPRVIAEEPT----SITIEWESRNREAG 1742
>AF040648-4|AAK21414.2| 4280|Caenorhabditis elegans Lethal protein
805, isoform a protein.
Length = 4280
Score = 27.9 bits (59), Expect = 8.5
Identities = 17/51 (33%), Positives = 28/51 (54%), Gaps = 5/51 (9%)
Query: 57 RNMKGGLQAVVWTDVIQITAMFGAMAIVAVKGTMDVGGIGVVWQ-RNMDSG 106
+ M GG AV+ TD +TA+ A ++A + T I + W+ RN ++G
Sbjct: 1696 KEMCGGTAAVMTTDAAALTALSTAPRVIAEEPT----SITIEWESRNREAG 1742
Database: celegans
Posted date: Oct 5, 2007 11:13 AM
Number of letters in database: 12,573,161
Number of sequences in database: 27,539
Lambda K H
0.327 0.142 0.442
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,792,430
Number of Sequences: 27539
Number of extensions: 202505
Number of successful extensions: 578
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 562
Number of HSP's gapped (non-prelim): 16
length of query: 279
length of database: 12,573,161
effective HSP length: 80
effective length of query: 199
effective length of database: 10,370,041
effective search space: 2063638159
effective search space used: 2063638159
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.7 bits)
S2: 59 (27.9 bits)
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