GeneModel BLAST Result against tribolium

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002620-TA|BGIBMGA002620-PA|IPR000433|Zinc finger,
ZZ-type
         (612 letters)

Database: tribolium 
           317 sequences; 114,650 total letters

Searching....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U09586-2|AAC47271.1|  712|Tribolium castaneum protease, reverse ...    24   2.7  
AJ621748-1|CAF21851.1|  228|Tribolium castaneum zinc finger tran...    24   3.5  
AM295014-1|CAL25729.1|  407|Tribolium castaneum ultraspiracle nu...    23   4.7  
EF222294-1|ABN79654.1|  451|Tribolium castaneum ecdysis triggeri...    23   8.1  
EF222293-1|ABN79653.1|  434|Tribolium castaneum ecdysis triggeri...    23   8.1  

>U09586-2|AAC47271.1|  712|Tribolium castaneum protease, reverse
           transcriptase andRNase H protein.
          Length = 712

 Score = 24.2 bits (50), Expect = 2.7
 Identities = 10/31 (32%), Positives = 17/31 (54%)

Query: 383 PSTSANDQPQASGEDSDKPATSQAQGGEGDA 413
           P + + +Q   +GE   +  +SQ+  GE DA
Sbjct: 28  PQSDSRNQQLRTGEKRKRSTSSQSTEGENDA 58


>AJ621748-1|CAF21851.1|  228|Tribolium castaneum zinc finger
           transcription factor protein.
          Length = 228

 Score = 23.8 bits (49), Expect = 3.5
 Identities = 7/19 (36%), Positives = 9/19 (47%)

Query: 126 VCNVCNSPVVGFRYKCAIC 144
           +C VC  P  GF +    C
Sbjct: 4   LCKVCGEPAAGFHFGAFTC 22


>AM295014-1|CAL25729.1|  407|Tribolium castaneum ultraspiracle
           nuclear receptor protein.
          Length = 407

 Score = 23.4 bits (48), Expect = 4.7
 Identities = 11/30 (36%), Positives = 15/30 (50%)

Query: 117 GNTAVHSGVVCNVCNSPVVGFRYKCAICHD 146
           GNT   S       N P+ G ++ C+IC D
Sbjct: 62  GNTPNKSSTSPYPPNHPLSGSKHLCSICGD 91


>EF222294-1|ABN79654.1|  451|Tribolium castaneum ecdysis triggering
           hormone receptorisoform B protein.
          Length = 451

 Score = 22.6 bits (46), Expect = 8.1
 Identities = 10/30 (33%), Positives = 16/30 (53%)

Query: 320 SQKCPPNTTATAPLFDNGGTSGPKIQFDVN 349
           S K  P+TT T     +   S P I+F+++
Sbjct: 3   SSKFSPSTTTTTTTTSSALNSTPLIEFNIS 32


>EF222293-1|ABN79653.1|  434|Tribolium castaneum ecdysis triggering
           hormone receptorisoform A protein.
          Length = 434

 Score = 22.6 bits (46), Expect = 8.1
 Identities = 10/30 (33%), Positives = 16/30 (53%)

Query: 320 SQKCPPNTTATAPLFDNGGTSGPKIQFDVN 349
           S K  P+TT T     +   S P I+F+++
Sbjct: 3   SSKFSPSTTTTTTTTSSALNSTPLIEFNIS 32


  Database: tribolium
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 114,650
  Number of sequences in database:  317
  
Lambda     K      H
   0.313    0.129    0.379 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 130,832
Number of Sequences: 317
Number of extensions: 5363
Number of successful extensions: 20
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 15
Number of HSP's gapped (non-prelim): 5
length of query: 612
length of database: 114,650
effective HSP length: 61
effective length of query: 551
effective length of database: 95,313
effective search space: 52517463
effective search space used: 52517463
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.9 bits)
S2: 46 (22.6 bits)