GeneModel BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002620-TA|BGIBMGA002620-PA|IPR000433|Zinc finger,
ZZ-type
         (612 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBP35G2.11c |||transcription related zf-ZZ type zinc finger pro...    57   8e-09
SPBC1711.05 |||nucleocytoplasmic transport chaperone Srp40 |Schi...    38   0.003
SPAC4H3.11c |ppc89|mug127|spindle pole body protein Ppc89|Schizo...    33   0.12 
SPAC6G9.12 |cfr1||Chs five related protein Cfr1|Schizosaccharomy...    32   0.20 
SPCC24B10.08c |||histone acetyltransferase complex subunit Ada2 ...    31   0.35 
SPAC167.05 ||SPAC57A7.01|Usp |Schizosaccharomyces pombe|chr 1|||...    30   1.1  
SPBC28F2.09 |||transcription factor TFIIA complex large subunit ...    29   2.5  
SPBC2F12.05c |||sterol binding ankyrin repeat protein|Schizosacc...    29   2.5  
SPBC660.15 |||mRNA cleavage factor complex subunit |Schizosaccha...    28   3.3  
SPCC1020.02 |spc7||kinetochore protein Spc7|Schizosaccharomyces ...    28   3.3  
SPCC663.11 |||ww domain binding protein 11 |Schizosaccharomyces ...    28   4.4  
SPAC29A4.16 |hal4|sat4, ppk10|halotolerence protein 4|Schizosacc...    27   5.8  
SPBC405.06 |||DNAJ protein Xdj1 |Schizosaccharomyces pombe|chr 2...    27   7.6  
SPBC28E12.03 |rga4||GTPase activating protein Rga4|Schizosacchar...    27   7.6  

>SPBP35G2.11c |||transcription related zf-ZZ type zinc finger
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 397

 Score = 56.8 bits (131), Expect = 8e-09
 Identities = 23/50 (46%), Positives = 33/50 (66%), Gaps = 1/50 (2%)

Query: 119 TAVHSGVVCNVCNS-PVVGFRYKCAICHDYDLCSKCEAAGNHNEHCMVRL 167
           + VH  V C+ C + P+VG R+ C +C DYDLCS C +  +H+ H M+RL
Sbjct: 204 STVHRSVQCDNCLAHPIVGPRFHCLVCEDYDLCSSCVSHVHHDHHSMLRL 253



 Score = 52.0 bits (119), Expect = 2e-07
 Identities = 18/43 (41%), Positives = 26/43 (60%), Gaps = 1/43 (2%)

Query: 126 VCNVCNSPVVGFRYKCAICHDYDLCSKCEAAGNH-NEHCMVRL 167
           +C+ C  P+   RYKC++C DYD+C  C    +H N H  VR+
Sbjct: 135 ICDHCEQPIHNVRYKCSVCDDYDICESCLTDNSHSNTHAFVRI 177



 Score = 37.9 bits (84), Expect = 0.004
 Identities = 15/48 (31%), Positives = 22/48 (45%)

Query: 108 TTMFPENTDGNTAVHSGVVCNVCNSPVVGFRYKCAICHDYDLCSKCEA 155
           + +F  N +  T   S V CN C   +    + C  C D+D+C  C A
Sbjct: 43  SNIFEHNNNSPTLRSSSVACNTCLKIIRNDSFHCTKCFDFDVCRDCYA 90


>SPBC1711.05 |||nucleocytoplasmic transport chaperone Srp40
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 451

 Score = 38.3 bits (85), Expect = 0.003
 Identities = 38/208 (18%), Positives = 79/208 (37%), Gaps = 5/208 (2%)

Query: 258 DMDISTEHXXXXXXXXXSEYQSTSQEVPHPQNTDQASETPKASEAASLNRNPSQQTPQSQ 317
           + D S+           S   S+  E         +S +   SE+ S +      +  S 
Sbjct: 111 ESDSSSSESESSSEDNDSSSSSSDSESESSSEDSDSSSSSSDSESESSSEGSDSSSSSSS 170

Query: 318 NASQKCPPNTTATAPLFDNGGTSGPKIQFDVNQEPDPKVLDDLQKVLNIIRTKYIEPHNN 377
           + S+    +  +++   D+   S  +     +   D +     +   +   +   E  ++
Sbjct: 171 SESESSSEDNDSSSSSSDSESESSSEDSDSSSSSSDSESESSSEGSDSSSSSSSSESESS 230

Query: 378 AKLQNPSTSAND-QPQASGEDSDKPATSQAQGGEGDANIAIDVDKTDAKSVNXXXXXXXG 436
           ++  + S+S++D + ++S EDSD  ++S     E  +    D D +   S +        
Sbjct: 231 SEDNDSSSSSSDSESESSSEDSDSSSSSSDSESESSSK---DSDSSSNSSDSEDDSSSDS 287

Query: 437 QDKEASSDKVD-DWTMVNKDLMDSSANE 463
            D E+ S   D D T  + D   SS++E
Sbjct: 288 SDSESESSSEDSDSTSSSSDSDSSSSSE 315


>SPAC4H3.11c |ppc89|mug127|spindle pole body protein
           Ppc89|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 783

 Score = 33.1 bits (72), Expect = 0.12
 Identities = 26/101 (25%), Positives = 48/101 (47%), Gaps = 2/101 (1%)

Query: 297 PKASEAASLNRNPSQQTPQSQNASQKCPPNTTATAPLFDNGGTSGPKIQFDVNQEPDPKV 356
           PK +     N   S+ TP + N+ ++ P +  A+A L +  G +  +   D N +   + 
Sbjct: 189 PKPTTPWRRNGFRSKTTP-NLNSGKETPSSYKASARLMEQLGLNHSEPSVDFNNQTSYR- 246

Query: 357 LDDLQKVLNIIRTKYIEPHNNAKLQNPSTSANDQPQASGED 397
           L +L  + ++IR   I+ + NAK  +     N  P AS ++
Sbjct: 247 LPNLTNLSSLIRDDTIDENGNAKEHDRLPELNTIPVASTDE 287


>SPAC6G9.12 |cfr1||Chs five related protein Cfr1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 620

 Score = 32.3 bits (70), Expect = 0.20
 Identities = 29/128 (22%), Positives = 53/128 (41%), Gaps = 7/128 (5%)

Query: 290 TDQASETPKASEAASLNRNPSQQTPQSQNASQKCPPNTTATAPLF--DNGGTSGPKIQFD 347
           T+Q   T + ++ A+  + P Q T Q    S    P+++A+ P    +        +  D
Sbjct: 285 TEQPKNTAEVAQGAASAKAPQQTTQQGTQNSANAEPSSSASVPAEAPETEAEQSIDVSSD 344

Query: 348 VNQEPDPKVLDDLQKVLNIIRTKYIEPHNNAKLQNPSTSANDQPQASGEDSDKPATSQA- 406
           +    D    ++       I+    +P N+ K +NP      Q + + E S+  +T  A 
Sbjct: 345 IGLRSDSSKPNEAPTSSENIKAD--QPENSTKQENPEEDM--QIKDAEEHSNLESTPAAQ 400

Query: 407 QGGEGDAN 414
           Q  E +AN
Sbjct: 401 QTSEVEAN 408


>SPCC24B10.08c |||histone acetyltransferase complex subunit Ada2
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 437

 Score = 31.5 bits (68), Expect = 0.35
 Identities = 12/32 (37%), Positives = 16/32 (50%), Gaps = 1/32 (3%)

Query: 127 CNVCNSPVV-GFRYKCAICHDYDLCSKCEAAG 157
           CNVC   +      +C  C D+DLC  C  +G
Sbjct: 8   CNVCAQDITRSIHIRCVECVDFDLCIPCFTSG 39


>SPAC167.05 ||SPAC57A7.01|Usp |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 601

 Score = 29.9 bits (64), Expect = 1.1
 Identities = 34/145 (23%), Positives = 59/145 (40%), Gaps = 11/145 (7%)

Query: 278 QSTSQEVPHPQNTDQASETPKASEAASLNRNPSQQTPQSQNASQKCPPNTTATAPLFDNG 337
           QST       + +D  S TP  +++     +P   +  +Q AS    P +    P+  + 
Sbjct: 168 QSTKSTASQRRMSD--SSTPSTTKSKEKIFSPKALSSPTQGASSNVTPESPPEKPI-PSF 224

Query: 338 GTSGPKIQFDVNQEPDPKVLDDLQ--KVLNIIRTKYIEP-HNNAKLQNPSTSANDQPQAS 394
             S P     V+   +   L D+Q       I  K++EP H N  L + S S+ D   + 
Sbjct: 225 VLSPPP----VSATNEANKLSDIQTSSPSQDIPAKHLEPLHLNRSLSS-SPSSEDSDLSL 279

Query: 395 GEDSDKPATSQAQGGEGDANIAIDV 419
             DSD     Q    E  +++++ +
Sbjct: 280 SSDSDDDEKKQPSKSEKTSSMSVSI 304


>SPBC28F2.09 |||transcription factor TFIIA complex large subunit
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 369

 Score = 28.7 bits (61), Expect = 2.5
 Identities = 41/189 (21%), Positives = 67/189 (35%), Gaps = 15/189 (7%)

Query: 287 PQNTDQASETPKASEAASLNRNPSQQTPQSQNASQKCPPNTTATAPLFDNGGTSGPKIQF 346
           PQ+    S    A      N N +   P   + S + P N TA +P+ ++  T+      
Sbjct: 127 PQSATNISFDSSAIPNVQSNPNNTAPFPSYSSNSLQLPTNQTADSPIINDHSTAN-VTST 185

Query: 347 DVNQEPDPKVLDDLQKVL--NIIRTKYIE-PHNNAKLQNPSTSANDQPQASG-----EDS 398
                PD    +    +L  N    K  E     +    P+ S ND PQ  G     +D+
Sbjct: 186 GQEHAPDSSSTNSFGGLLLPNQNSPKKSELGETESSNTTPANSRNDVPQTDGAIHDLDDA 245

Query: 399 DKPATSQ----AQGGEGDANIAIDVDKTDAKSVNXXXXXXXGQDKEASSDKVDDWTMVNK 454
             P+  +    A   + DA I   + K     ++        + K       D+   +N 
Sbjct: 246 GSPSNFESNRFAIAQKADAEIYEVLKKNRILQIDGTIEDNEDEKKPPVDTPSDE--AINS 303

Query: 455 DLMDSSANE 463
           DL D  ++E
Sbjct: 304 DLDDPDSDE 312


>SPBC2F12.05c |||sterol binding ankyrin repeat
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1310

 Score = 28.7 bits (61), Expect = 2.5
 Identities = 23/82 (28%), Positives = 34/82 (41%), Gaps = 6/82 (7%)

Query: 278 QSTSQEVP-HPQNTDQAS-ETPKASEAA----SLNRNPSQQTPQSQNASQKCPPNTTATA 331
           QST  + P   Q + Q+    PKA E +    S    PS  +  S+N            A
Sbjct: 802 QSTQHQQPVEVQKSIQSDVSAPKAKEVSEKPVSHQAKPSNASQLSRNTDDTQAKEAPKEA 861

Query: 332 PLFDNGGTSGPKIQFDVNQEPD 353
            + DN  T+  K+  D + +PD
Sbjct: 862 SIPDNASTASTKVSNDSHLKPD 883


>SPBC660.15 |||mRNA cleavage factor complex subunit
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 474

 Score = 28.3 bits (60), Expect = 3.3
 Identities = 22/93 (23%), Positives = 38/93 (40%), Gaps = 5/93 (5%)

Query: 361 QKVLNIIRTK----YIEPHNNAKLQNPSTSANDQPQASGEDSDKPATSQAQGGEGDANIA 416
           Q+  N+  TK    Y E   + +     T  N   +  G D D+  + Q    E +AN  
Sbjct: 31  QETSNVTPTKENEGYEELEKSGEAGAERTKENPFREEPGADFDRSGSDQQYSAEAEANQE 90

Query: 417 IDVDKTDAKSVNXXXXXXXGQD-KEASSDKVDD 448
            D+++T  ++ +       GQ    A+ D  +D
Sbjct: 91  DDLNETSQQAPDPSSYDIRGQALSSATWDNAED 123


>SPCC1020.02 |spc7||kinetochore protein Spc7|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1364

 Score = 28.3 bits (60), Expect = 3.3
 Identities = 14/47 (29%), Positives = 24/47 (51%), Gaps = 1/47 (2%)

Query: 275 SEYQSTSQEVPHPQ-NTDQASETPKASEAASLNRNPSQQTPQSQNAS 320
           SE  +++   P     +D  + +PK     S +RN +Q +P S +AS
Sbjct: 132 SEKSTSNHSTPERTFASDAKNHSPKGPTTTSFSRNETQSSPHSHSAS 178


>SPCC663.11 |||ww domain binding protein 11 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 278

 Score = 27.9 bits (59), Expect = 4.4
 Identities = 17/56 (30%), Positives = 24/56 (42%), Gaps = 1/56 (1%)

Query: 275 SEYQSTSQEVPHPQNTDQASETPKASEAASLNRNPSQQTPQSQNASQKCPPNTTAT 330
           SE   +  ++P P   +   E PK  E  + +  P     Q  NAS   P +TT T
Sbjct: 145 SETDESVIDIPLPSE-EYPFEDPKPREKKNKSFKPKHHKKQDINASSAQPKSTTTT 199


>SPAC29A4.16 |hal4|sat4, ppk10|halotolerence protein
           4|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 636

 Score = 27.5 bits (58), Expect = 5.8
 Identities = 19/72 (26%), Positives = 30/72 (41%), Gaps = 1/72 (1%)

Query: 260 DISTEHXXXXXXXXXSEYQSTSQEVPHPQNTDQASETPKASEAASLNRNPSQQTPQSQNA 319
           +IS++          S  ++     P P ++ Q   TP   EAAS +       P S N+
Sbjct: 9   EISSKFASLGLGSLKSTPKARETTEPPPPSSQQPPSTPNGKEAASPSALKQNVRP-SLNS 67

Query: 320 SQKCPPNTTATA 331
            Q+ P +  A A
Sbjct: 68  VQQTPASIDAVA 79


>SPBC405.06 |||DNAJ protein Xdj1 |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 413

 Score = 27.1 bits (57), Expect = 7.6
 Identities = 15/44 (34%), Positives = 21/44 (47%), Gaps = 7/44 (15%)

Query: 122 HSGVVCNVCNSPVVGFRYKCAICHDYDLCSKCEAAGNHNEHCMV 165
           +S V+C+ CN   V FR K       D C  C+ +G   E  M+
Sbjct: 186 NSQVICDTCNGKGVSFRGK-------DRCKHCKGSGTVPEQRML 222


>SPBC28E12.03 |rga4||GTPase activating protein
           Rga4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 933

 Score = 27.1 bits (57), Expect = 7.6
 Identities = 11/35 (31%), Positives = 17/35 (48%)

Query: 126 VCNVCNSPVVGFRYKCAICHDYDLCSKCEAAGNHN 160
           +CN C++P+  F        ++  CS C A  N N
Sbjct: 81  ICNGCSTPICEFNAVSNSQANHPCCSNCRAFINSN 115


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.313    0.129    0.379 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,607,007
Number of Sequences: 5004
Number of extensions: 103721
Number of successful extensions: 297
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 10
Number of HSP's that attempted gapping in prelim test: 285
Number of HSP's gapped (non-prelim): 21
length of query: 612
length of database: 2,362,478
effective HSP length: 77
effective length of query: 535
effective length of database: 1,977,170
effective search space: 1057785950
effective search space used: 1057785950
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.9 bits)
S2: 57 (27.1 bits)