GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002620-TA|BGIBMGA002620-PA|IPR000433|Zinc finger,
ZZ-type
         (612 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             27   0.45 
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    25   1.8  
DQ232888-1|ABB36783.1|  499|Apis mellifera cytochrome P450 monoo...    24   4.2  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              23   7.3  

>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 27.1 bits (57), Expect = 0.45
 Identities = 14/45 (31%), Positives = 20/45 (44%), Gaps = 5/45 (11%)

Query: 278  QSTSQEVPHPQNTDQASETPKASEAASLNRNPSQQTPQSQNASQK 322
            Q T Q+ P  Q   Q  + P+       ++ P QQ PQ Q   Q+
Sbjct: 1498 QKTQQQQPQQQQQQQQQQQPQQQ-----SQQPQQQQPQPQQQQQQ 1537



 Score = 22.6 bits (46), Expect = 9.7
 Identities = 12/38 (31%), Positives = 15/38 (39%)

Query: 285 PHPQNTDQASETPKASEAASLNRNPSQQTPQSQNASQK 322
           PH Q     S  P+A   A   +   QQ  Q Q   Q+
Sbjct: 810 PHQQLHHHQSTHPQAQAQAQPQQQQQQQQQQPQQQQQQ 847



 Score = 22.6 bits (46), Expect = 9.7
 Identities = 15/44 (34%), Positives = 20/44 (45%), Gaps = 5/44 (11%)

Query: 368  RTKYIEPHNNAKLQNPSTSANDQPQASGEDSDKPATSQAQGGEG 411
            R +Y  P   A  Q     A  +PQ+   +  KPAT    GG+G
Sbjct: 994  RGRYTPPQP-ANAQQGQAQAQAKPQSQEANKPKPAT----GGKG 1032


>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
           protein.
          Length = 1124

 Score = 25.0 bits (52), Expect = 1.8
 Identities = 10/28 (35%), Positives = 17/28 (60%)

Query: 585 GWLVELLEKKDGNIAAVLDLLTPVNPKI 612
           G L+      DG  ++++D+ TPVN K+
Sbjct: 915 GELLSSCVSNDGGCSSLVDVSTPVNKKV 942


>DQ232888-1|ABB36783.1|  499|Apis mellifera cytochrome P450
           monooxygenase protein.
          Length = 499

 Score = 23.8 bits (49), Expect = 4.2
 Identities = 11/33 (33%), Positives = 17/33 (51%)

Query: 16  NAQPEVRRFGVEKTVVSSFHYLNAKLQEVYPKL 48
           N   E RR G E   V+  + +  KL++  P+L
Sbjct: 200 NENSEFRRMGREVFAVNFMNVMRMKLKQFMPRL 232


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 23.0 bits (47), Expect = 7.3
 Identities = 11/21 (52%), Positives = 14/21 (66%)

Query: 278  QSTSQEVPHPQNTDQASETPK 298
            + TSQ+VP  Q T +ASE  K
Sbjct: 1224 EPTSQKVPPNQLTHEASELDK 1244


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.313    0.129    0.379 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 160,065
Number of Sequences: 429
Number of extensions: 6688
Number of successful extensions: 46
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 38
Number of HSP's gapped (non-prelim): 8
length of query: 612
length of database: 140,377
effective HSP length: 62
effective length of query: 550
effective length of database: 113,779
effective search space: 62578450
effective search space used: 62578450
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.9 bits)
S2: 46 (22.6 bits)